miRNA display CGI


Results 41 - 60 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28778 3' -55.4 NC_006146.1 + 145198 0.66 0.913449
Target:  5'- aGGGGC-UGGCCCGGcuuccACUCCugaGGGu -3'
miRNA:   3'- -UCUCGuACCGGGUCu----UGAGGua-CCUg -5'
28778 3' -55.4 NC_006146.1 + 164479 0.66 0.913449
Target:  5'- cAGGGCccacAUGGCCCugggccaaaGGGACcCCAUGGcCc -3'
miRNA:   3'- -UCUCG----UACCGGG---------UCUUGaGGUACCuG- -5'
28778 3' -55.4 NC_006146.1 + 168195 0.66 0.90737
Target:  5'- cGGGGag-GGCCCGGGGCcgCgCGUGGGg -3'
miRNA:   3'- -UCUCguaCCGGGUCUUGa-G-GUACCUg -5'
28778 3' -55.4 NC_006146.1 + 167263 0.66 0.90737
Target:  5'- cGGGGag-GGCCCGGGGCcgCgCGUGGGg -3'
miRNA:   3'- -UCUCguaCCGGGUCUUGa-G-GUACCUg -5'
28778 3' -55.4 NC_006146.1 + 169127 0.66 0.90737
Target:  5'- cGGGGag-GGCCCGGGGCcgCgCGUGGGg -3'
miRNA:   3'- -UCUCguaCCGGGUCUUGa-G-GUACCUg -5'
28778 3' -55.4 NC_006146.1 + 170059 0.66 0.90737
Target:  5'- cGGGGag-GGCCCGGGGCcgCgCGUGGGg -3'
miRNA:   3'- -UCUCguaCCGGGUCUUGa-G-GUACCUg -5'
28778 3' -55.4 NC_006146.1 + 118064 0.66 0.907369
Target:  5'- gGGGGCGgcggcGGCUCGGccCUCCGcauccUGGGCa -3'
miRNA:   3'- -UCUCGUa----CCGGGUCuuGAGGU-----ACCUG- -5'
28778 3' -55.4 NC_006146.1 + 92086 0.66 0.907369
Target:  5'- gGGGGCGgcccGGCCUGGGGCUgCugcugggGGGCg -3'
miRNA:   3'- -UCUCGUa---CCGGGUCUUGAgGua-----CCUG- -5'
28778 3' -55.4 NC_006146.1 + 13926 0.66 0.907369
Target:  5'- aGGAGUGgcgggugGGCCCgggGGAGC-CCA-GGACa -3'
miRNA:   3'- -UCUCGUa------CCGGG---UCUUGaGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 92491 0.66 0.90105
Target:  5'- gGGAGgucCAgaagGGCCCAGcGGCUCCuaucagaGGACg -3'
miRNA:   3'- -UCUC---GUa---CCGGGUC-UUGAGGua-----CCUG- -5'
28778 3' -55.4 NC_006146.1 + 136719 0.66 0.90105
Target:  5'- --uGCcUGGCCCAGGG-UCCGgcuggGGGCg -3'
miRNA:   3'- ucuCGuACCGGGUCUUgAGGUa----CCUG- -5'
28778 3' -55.4 NC_006146.1 + 36776 0.66 0.90105
Target:  5'- aAGGGgGUGGCCCuAGGugUUaggagGGGCa -3'
miRNA:   3'- -UCUCgUACCGGG-UCUugAGgua--CCUG- -5'
28778 3' -55.4 NC_006146.1 + 93694 0.67 0.894493
Target:  5'- uGGAgGCAUaGUCCAGGAggCCGUGGAg -3'
miRNA:   3'- -UCU-CGUAcCGGGUCUUgaGGUACCUg -5'
28778 3' -55.4 NC_006146.1 + 157843 0.67 0.894492
Target:  5'- gAGGGCGgccgccuuggGGCCCGGAGuCUCgGaGGAUc -3'
miRNA:   3'- -UCUCGUa---------CCGGGUCUU-GAGgUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 154765 0.67 0.894492
Target:  5'- gAGGGCGgccgccuuggGGCCCGGAGuCUCgGaGGAUc -3'
miRNA:   3'- -UCUCGUa---------CCGGGUCUU-GAGgUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 145532 0.67 0.894492
Target:  5'- gAGGGCGgccgccuuggGGCCCGGAGuCUCgGaGGAUc -3'
miRNA:   3'- -UCUCGUa---------CCGGGUCUU-GAGgUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 142454 0.67 0.894492
Target:  5'- gAGGGCGgccgccuuggGGCCCGGAGuCUCgGaGGAUc -3'
miRNA:   3'- -UCUCGUa---------CCGGGUCUU-GAGgUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 71464 0.67 0.894492
Target:  5'- aGGAGCGagGGCCUcauGCUCC-UGGAUc -3'
miRNA:   3'- -UCUCGUa-CCGGGucuUGAGGuACCUG- -5'
28778 3' -55.4 NC_006146.1 + 64256 0.67 0.894492
Target:  5'- aGGGGCGUGGCUC---GCUCCGaacaUGGGu -3'
miRNA:   3'- -UCUCGUACCGGGucuUGAGGU----ACCUg -5'
28778 3' -55.4 NC_006146.1 + 42695 0.67 0.894492
Target:  5'- aAGAGCGucUGGCCCGGcgccgcGGCgcccCCcUGGGCc -3'
miRNA:   3'- -UCUCGU--ACCGGGUC------UUGa---GGuACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.