miRNA display CGI


Results 21 - 40 of 166 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28778 3' -55.4 NC_006146.1 + 127590 0.66 0.919285
Target:  5'- gAGGGCAcuaCCCAGGACUUCuuuucGGACg -3'
miRNA:   3'- -UCUCGUaccGGGUCUUGAGGua---CCUG- -5'
28778 3' -55.4 NC_006146.1 + 147657 0.66 0.919285
Target:  5'- cGGGGC-UGGaCUCGGGGCga-GUGGACg -3'
miRNA:   3'- -UCUCGuACC-GGGUCUUGaggUACCUG- -5'
28778 3' -55.4 NC_006146.1 + 156890 0.66 0.919285
Target:  5'- cGGGGC-UGGaCUCGGGGCga-GUGGACg -3'
miRNA:   3'- -UCUCGuACC-GGGUCUUGaggUACCUG- -5'
28778 3' -55.4 NC_006146.1 + 14829 0.66 0.919285
Target:  5'- gAGGGCAcggucucgGGCCCGGGGCcgcgggaggCCGaggGGGCa -3'
miRNA:   3'- -UCUCGUa-------CCGGGUCUUGa--------GGUa--CCUG- -5'
28778 3' -55.4 NC_006146.1 + 141501 0.66 0.919285
Target:  5'- cGGGGC-UGGaCUCGGGGCga-GUGGACg -3'
miRNA:   3'- -UCUCGuACC-GGGUCUUGaggUACCUG- -5'
28778 3' -55.4 NC_006146.1 + 150734 0.66 0.919285
Target:  5'- cGGGGC-UGGaCUCGGGGCga-GUGGACg -3'
miRNA:   3'- -UCUCGuACC-GGGUCUUGaggUACCUG- -5'
28778 3' -55.4 NC_006146.1 + 153812 0.66 0.919285
Target:  5'- cGGGGC-UGGaCUCGGGGCga-GUGGACg -3'
miRNA:   3'- -UCUCGuACC-GGGUCUUGaggUACCUG- -5'
28778 3' -55.4 NC_006146.1 + 144579 0.66 0.919285
Target:  5'- cGGGGC-UGGaCUCGGGGCga-GUGGACg -3'
miRNA:   3'- -UCUCGuACC-GGGUCUUGaggUACCUG- -5'
28778 3' -55.4 NC_006146.1 + 137907 0.66 0.913449
Target:  5'- uGGA-CAgGGCCgGGggUUCCggGGGCa -3'
miRNA:   3'- -UCUcGUaCCGGgUCuuGAGGuaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 92210 0.66 0.913449
Target:  5'- cGGGCccGGCCUGGGGCUgCugcugggGGGCg -3'
miRNA:   3'- uCUCGuaCCGGGUCUUGAgGua-----CCUG- -5'
28778 3' -55.4 NC_006146.1 + 129124 0.66 0.913449
Target:  5'- gAGAGCGggcgcccgGGCgCAGGGcCUCCGgcgGGAa -3'
miRNA:   3'- -UCUCGUa-------CCGgGUCUU-GAGGUa--CCUg -5'
28778 3' -55.4 NC_006146.1 + 164479 0.66 0.913449
Target:  5'- cAGGGCccacAUGGCCCugggccaaaGGGACcCCAUGGcCc -3'
miRNA:   3'- -UCUCG----UACCGGG---------UCUUGaGGUACCuG- -5'
28778 3' -55.4 NC_006146.1 + 92120 0.66 0.913449
Target:  5'- cGGGCccGGCCUGGGGCUgCugcugggGGGCg -3'
miRNA:   3'- uCUCGuaCCGGGUCUUGAgGua-----CCUG- -5'
28778 3' -55.4 NC_006146.1 + 145198 0.66 0.913449
Target:  5'- aGGGGC-UGGCCCGGcuuccACUCCugaGGGu -3'
miRNA:   3'- -UCUCGuACCGGGUCu----UGAGGua-CCUg -5'
28778 3' -55.4 NC_006146.1 + 92300 0.66 0.913449
Target:  5'- cGGGCccGGCCUGGGGCUgCugcugggGGGCg -3'
miRNA:   3'- uCUCGuaCCGGGUCUUGAgGua-----CCUG- -5'
28778 3' -55.4 NC_006146.1 + 131214 0.66 0.913449
Target:  5'- cGGAGCGgcgcugcaGGCCCAGGAgcccgccgcCUCCAaGGcCa -3'
miRNA:   3'- -UCUCGUa-------CCGGGUCUU---------GAGGUaCCuG- -5'
28778 3' -55.4 NC_006146.1 + 92180 0.66 0.913449
Target:  5'- cGGGCccGGCCUGGGGCUgCugcugggGGGCg -3'
miRNA:   3'- uCUCGuaCCGGGUCUUGAgGua-----CCUG- -5'
28778 3' -55.4 NC_006146.1 + 92150 0.66 0.913449
Target:  5'- cGGGCccGGCCUGGGGCUgCugcugggGGGCg -3'
miRNA:   3'- uCUCGuaCCGGGUCUUGAgGua-----CCUG- -5'
28778 3' -55.4 NC_006146.1 + 92001 0.66 0.913449
Target:  5'- cGGGCccGGCCUGGGGCUgCugcugggGGGCg -3'
miRNA:   3'- uCUCGuaCCGGGUCUUGAgGua-----CCUG- -5'
28778 3' -55.4 NC_006146.1 + 92031 0.66 0.913449
Target:  5'- cGGGCccGGCCUGGGGCUgCugcugggGGGCg -3'
miRNA:   3'- uCUCGuaCCGGGUCUUGAgGua-----CCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.