miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28778 3' -55.4 NC_006146.1 + 25782 0.72 0.650841
Target:  5'- cAGAGCcUGGCCCAGGccuucuucaucuACgCCggGGACc -3'
miRNA:   3'- -UCUCGuACCGGGUCU------------UGaGGuaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 25816 0.66 0.930227
Target:  5'- cAGGGCuucaGaGCCCAGAACgUCCcgagaagGGACc -3'
miRNA:   3'- -UCUCGua--C-CGGGUCUUG-AGGua-----CCUG- -5'
28778 3' -55.4 NC_006146.1 + 28757 0.71 0.702145
Target:  5'- gGGAGCcgcccucggGGCCCAGGGCcccuagUCCAgaGGACg -3'
miRNA:   3'- -UCUCGua-------CCGGGUCUUG------AGGUa-CCUG- -5'
28778 3' -55.4 NC_006146.1 + 28780 0.71 0.70113
Target:  5'- gGGAGCAUacccuggGGCCgAGGGCUCacuugGGGCa -3'
miRNA:   3'- -UCUCGUA-------CCGGgUCUUGAGgua--CCUG- -5'
28778 3' -55.4 NC_006146.1 + 28894 0.66 0.930227
Target:  5'- cAGGGCuucaGaGCCCAGAACgUCCcgagaagGGACc -3'
miRNA:   3'- -UCUCGua--C-CGGGUCUUG-AGGua-----CCUG- -5'
28778 3' -55.4 NC_006146.1 + 30921 0.66 0.930227
Target:  5'- ----gGUGGCCCAGGGgggagcccgUUUCGUGGGCg -3'
miRNA:   3'- ucucgUACCGGGUCUU---------GAGGUACCUG- -5'
28778 3' -55.4 NC_006146.1 + 33020 0.68 0.848779
Target:  5'- cGGGGacccccugccGGCCCGGGGCggggCCcgGGACa -3'
miRNA:   3'- -UCUCgua-------CCGGGUCUUGa---GGuaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 33306 0.72 0.630151
Target:  5'- aGGGGCAcccGGCCCccggcccGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa--CCGGGu------CUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 33324 0.7 0.712262
Target:  5'- uGGGGCuccggGGUCCGGGuGCUCCG-GGGCa -3'
miRNA:   3'- -UCUCGua---CCGGGUCU-UGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 33398 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 33491 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 33584 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 33677 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 33770 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 33863 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 33955 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 34035 0.69 0.771166
Target:  5'- cGGGCGUGGuCCCGGGGC-CUAUGccGGCc -3'
miRNA:   3'- uCUCGUACC-GGGUCUUGaGGUAC--CUG- -5'
28778 3' -55.4 NC_006146.1 + 34048 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 34141 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 34234 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.