miRNA display CGI


Results 1 - 20 of 166 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28778 3' -55.4 NC_006146.1 + 3063 0.68 0.816859
Target:  5'- gAGAGCGcguUGGCCCAGGcuACcgUCCAgaccgcucUGGAg -3'
miRNA:   3'- -UCUCGU---ACCGGGUCU--UG--AGGU--------ACCUg -5'
28778 3' -55.4 NC_006146.1 + 6430 0.71 0.661168
Target:  5'- cAGGGCcaugugGGCCCuGGGgUCCAUGGGg -3'
miRNA:   3'- -UCUCGua----CCGGGuCUUgAGGUACCUg -5'
28778 3' -55.4 NC_006146.1 + 9076 0.7 0.751937
Target:  5'- cGGGGCGUGGCCCAaaaggaaagccGGGuCUCCcagGGAg -3'
miRNA:   3'- -UCUCGUACCGGGU-----------CUU-GAGGua-CCUg -5'
28778 3' -55.4 NC_006146.1 + 10670 0.66 0.930227
Target:  5'- cGGGGa--GGCCCGGGGCgauacCCGcGGGCa -3'
miRNA:   3'- -UCUCguaCCGGGUCUUGa----GGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 13367 0.71 0.702145
Target:  5'- gGGAGCcgcccucggGGCCCAGGGCcccuagUCCAgaGGACg -3'
miRNA:   3'- -UCUCGua-------CCGGGUCUUG------AGGUa-CCUG- -5'
28778 3' -55.4 NC_006146.1 + 13504 0.66 0.930227
Target:  5'- cAGGGCuucaGaGCCCAGAACgUCCcgagaagGGACc -3'
miRNA:   3'- -UCUCGua--C-CGGGUCUUG-AGGua-----CCUG- -5'
28778 3' -55.4 NC_006146.1 + 13926 0.66 0.907369
Target:  5'- aGGAGUGgcgggugGGCCCgggGGAGC-CCA-GGACa -3'
miRNA:   3'- -UCUCGUa------CCGGG---UCUUGaGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 14535 0.67 0.887701
Target:  5'- gAGAGCcuggaccgGGCCCuGGAGCUgC-UGGGCc -3'
miRNA:   3'- -UCUCGua------CCGGG-UCUUGAgGuACCUG- -5'
28778 3' -55.4 NC_006146.1 + 14829 0.66 0.919285
Target:  5'- gAGGGCAcggucucgGGCCCGGGGCcgcgggaggCCGaggGGGCa -3'
miRNA:   3'- -UCUCGUa-------CCGGGUCUUGa--------GGUa--CCUG- -5'
28778 3' -55.4 NC_006146.1 + 16445 0.71 0.702145
Target:  5'- gGGAGCcgcccucggGGCCCAGGGCcccuagUCCAgaGGACg -3'
miRNA:   3'- -UCUCGua-------CCGGGUCUUG------AGGUa-CCUG- -5'
28778 3' -55.4 NC_006146.1 + 16582 0.66 0.930227
Target:  5'- cAGGGCuucaGaGCCCAGAACgUCCcgagaagGGACc -3'
miRNA:   3'- -UCUCGua--C-CGGGUCUUG-AGGua-----CCUG- -5'
28778 3' -55.4 NC_006146.1 + 19523 0.71 0.702145
Target:  5'- gGGAGCcgcccucggGGCCCAGGGCcccuagUCCAgaGGACg -3'
miRNA:   3'- -UCUCGua-------CCGGGUCUUG------AGGUa-CCUG- -5'
28778 3' -55.4 NC_006146.1 + 19660 0.66 0.930227
Target:  5'- cAGGGCuucaGaGCCCAGAACgUCCcgagaagGGACc -3'
miRNA:   3'- -UCUCGua--C-CGGGUCUUG-AGGua-----CCUG- -5'
28778 3' -55.4 NC_006146.1 + 20890 0.68 0.850383
Target:  5'- uGGAGCG-GGCCaAGGcCUUCGUGGAg -3'
miRNA:   3'- -UCUCGUaCCGGgUCUuGAGGUACCUg -5'
28778 3' -55.4 NC_006146.1 + 21095 0.66 0.930227
Target:  5'- cGGAGCcuguuuGUGGCCCccauCUCCcUGGAg -3'
miRNA:   3'- -UCUCG------UACCGGGucuuGAGGuACCUg -5'
28778 3' -55.4 NC_006146.1 + 22601 0.71 0.702145
Target:  5'- gGGAGCcgcccucggGGCCCAGGGCcccuagUCCAgaGGACg -3'
miRNA:   3'- -UCUCGua-------CCGGGUCUUG------AGGUa-CCUG- -5'
28778 3' -55.4 NC_006146.1 + 22738 0.66 0.930227
Target:  5'- cAGGGCuucaGaGCCCAGAACgUCCcgagaagGGACc -3'
miRNA:   3'- -UCUCGua--C-CGGGUCUUG-AGGua-----CCUG- -5'
28778 3' -55.4 NC_006146.1 + 24354 0.7 0.742156
Target:  5'- aGGAGCuacaaguaGUGGCgCAGGgccaGCUCCA-GGGCg -3'
miRNA:   3'- -UCUCG--------UACCGgGUCU----UGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 25394 0.71 0.68174
Target:  5'- -cGGCAagGGCUacguCAGAGuCUCCGUGGACa -3'
miRNA:   3'- ucUCGUa-CCGG----GUCUU-GAGGUACCUG- -5'
28778 3' -55.4 NC_006146.1 + 25679 0.71 0.702145
Target:  5'- gGGAGCcgcccucggGGCCCAGGGCcccuagUCCAgaGGACg -3'
miRNA:   3'- -UCUCGua-------CCGGGUCUUG------AGGUa-CCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.