miRNA display CGI


Results 1 - 20 of 166 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28778 3' -55.4 NC_006146.1 + 170059 0.66 0.90737
Target:  5'- cGGGGag-GGCCCGGGGCcgCgCGUGGGg -3'
miRNA:   3'- -UCUCguaCCGGGUCUUGa-G-GUACCUg -5'
28778 3' -55.4 NC_006146.1 + 169681 0.7 0.726307
Target:  5'- --cGCGUGGCCCGcccccgggucuucccGGGCUCCcccucacggGUGGGCg -3'
miRNA:   3'- ucuCGUACCGGGU---------------CUUGAGG---------UACCUG- -5'
28778 3' -55.4 NC_006146.1 + 169127 0.66 0.90737
Target:  5'- cGGGGag-GGCCCGGGGCcgCgCGUGGGg -3'
miRNA:   3'- -UCUCguaCCGGGUCUUGa-G-GUACCUg -5'
28778 3' -55.4 NC_006146.1 + 168749 0.7 0.726307
Target:  5'- --cGCGUGGCCCGcccccgggucuucccGGGCUCCcccucacggGUGGGCg -3'
miRNA:   3'- ucuCGUACCGGGU---------------CUUGAGG---------UACCUG- -5'
28778 3' -55.4 NC_006146.1 + 168195 0.66 0.90737
Target:  5'- cGGGGag-GGCCCGGGGCcgCgCGUGGGg -3'
miRNA:   3'- -UCUCguaCCGGGUCUUGa-G-GUACCUg -5'
28778 3' -55.4 NC_006146.1 + 167817 0.7 0.726307
Target:  5'- --cGCGUGGCCCGcccccgggucuucccGGGCUCCcccucacggGUGGGCg -3'
miRNA:   3'- ucuCGUACCGGGU---------------CUUGAGG---------UACCUG- -5'
28778 3' -55.4 NC_006146.1 + 167263 0.66 0.90737
Target:  5'- cGGGGag-GGCCCGGGGCcgCgCGUGGGg -3'
miRNA:   3'- -UCUCguaCCGGGUCUUGa-G-GUACCUg -5'
28778 3' -55.4 NC_006146.1 + 165735 0.72 0.630151
Target:  5'- cGGGCcUGGCCaGGAACUUCAgcaGGGCg -3'
miRNA:   3'- uCUCGuACCGGgUCUUGAGGUa--CCUG- -5'
28778 3' -55.4 NC_006146.1 + 164479 0.66 0.913449
Target:  5'- cAGGGCccacAUGGCCCugggccaaaGGGACcCCAUGGcCc -3'
miRNA:   3'- -UCUCG----UACCGGG---------UCUUGaGGUACCuG- -5'
28778 3' -55.4 NC_006146.1 + 161431 0.67 0.87343
Target:  5'- cGGGUGUGGCCCcgcgGGAAC-CCAaggcgcgugGGGCg -3'
miRNA:   3'- uCUCGUACCGGG----UCUUGaGGUa--------CCUG- -5'
28778 3' -55.4 NC_006146.1 + 160054 0.66 0.923226
Target:  5'- gAGAGCcguAUGGCCUgcuggcuggcuucGGAGCcuaucucauggcCCAUGGGCg -3'
miRNA:   3'- -UCUCG---UACCGGG-------------UCUUGa-----------GGUACCUG- -5'
28778 3' -55.4 NC_006146.1 + 157843 0.67 0.894492
Target:  5'- gAGGGCGgccgccuuggGGCCCGGAGuCUCgGaGGAUc -3'
miRNA:   3'- -UCUCGUa---------CCGGGUCUU-GAGgUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 156890 0.66 0.919285
Target:  5'- cGGGGC-UGGaCUCGGGGCga-GUGGACg -3'
miRNA:   3'- -UCUCGuACC-GGGUCUUGaggUACCUG- -5'
28778 3' -55.4 NC_006146.1 + 156572 0.67 0.868974
Target:  5'- --cGCAUGGCCUgagucccuacuuuuaGGGGCUCC-UGGGg -3'
miRNA:   3'- ucuCGUACCGGG---------------UCUUGAGGuACCUg -5'
28778 3' -55.4 NC_006146.1 + 156338 0.71 0.699098
Target:  5'- uGGGGCucacgccccgaaagcGGCCCAGcAGCUCCA-GGGCc -3'
miRNA:   3'- -UCUCGua-------------CCGGGUC-UUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 155559 0.68 0.858276
Target:  5'- uGGAGCcgGGCUCgcgcGGGGCgcccgCCAgGGGCa -3'
miRNA:   3'- -UCUCGuaCCGGG----UCUUGa----GGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 154765 0.67 0.894492
Target:  5'- gAGGGCGgccgccuuggGGCCCGGAGuCUCgGaGGAUc -3'
miRNA:   3'- -UCUCGUa---------CCGGGUCUU-GAGgUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 153812 0.66 0.919285
Target:  5'- cGGGGC-UGGaCUCGGGGCga-GUGGACg -3'
miRNA:   3'- -UCUCGuACC-GGGUCUUGaggUACCUG- -5'
28778 3' -55.4 NC_006146.1 + 153494 0.67 0.868974
Target:  5'- --cGCAUGGCCUgagucccuacuuuuaGGGGCUCC-UGGGg -3'
miRNA:   3'- ucuCGUACCGGG---------------UCUUGAGGuACCUg -5'
28778 3' -55.4 NC_006146.1 + 151688 0.67 0.86596
Target:  5'- gAGGGCGgcgccuuggGGCCCGGAGuCUCgGaGGAUc -3'
miRNA:   3'- -UCUCGUa--------CCGGGUCUU-GAGgUaCCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.