miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28778 3' -55.4 NC_006146.1 + 63251 0.73 0.548061
Target:  5'- uGGGGCaAUGGCCUccggGGGGCUCUAccUGGGCc -3'
miRNA:   3'- -UCUCG-UACCGGG----UCUUGAGGU--ACCUG- -5'
28778 3' -55.4 NC_006146.1 + 168749 0.7 0.726307
Target:  5'- --cGCGUGGCCCGcccccgggucuucccGGGCUCCcccucacggGUGGGCg -3'
miRNA:   3'- ucuCGUACCGGGU---------------CUUGAGG---------UACCUG- -5'
28778 3' -55.4 NC_006146.1 + 90554 0.7 0.751938
Target:  5'- uGGAGCAgGGCCCGGGAgaagaCCcgGGAg -3'
miRNA:   3'- -UCUCGUaCCGGGUCUUga---GGuaCCUg -5'
28778 3' -55.4 NC_006146.1 + 28894 0.66 0.930227
Target:  5'- cAGGGCuucaGaGCCCAGAACgUCCcgagaagGGACc -3'
miRNA:   3'- -UCUCGua--C-CGGGUCUUG-AGGua-----CCUG- -5'
28778 3' -55.4 NC_006146.1 + 126991 0.71 0.691968
Target:  5'- cGGGCGacgcGGuCCCGGAGCUCaUGUGGGCu -3'
miRNA:   3'- uCUCGUa---CC-GGGUCUUGAG-GUACCUG- -5'
28778 3' -55.4 NC_006146.1 + 156338 0.71 0.699098
Target:  5'- uGGGGCucacgccccgaaagcGGCCCAGcAGCUCCA-GGGCc -3'
miRNA:   3'- -UCUCGua-------------CCGGGUC-UUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 16445 0.71 0.702145
Target:  5'- gGGAGCcgcccucggGGCCCAGGGCcccuagUCCAgaGGACg -3'
miRNA:   3'- -UCUCGua-------CCGGGUCUUG------AGGUa-CCUG- -5'
28778 3' -55.4 NC_006146.1 + 19523 0.71 0.702145
Target:  5'- gGGAGCcgcccucggGGCCCAGGGCcccuagUCCAgaGGACg -3'
miRNA:   3'- -UCUCGua-------CCGGGUCUUG------AGGUa-CCUG- -5'
28778 3' -55.4 NC_006146.1 + 28757 0.71 0.702145
Target:  5'- gGGAGCcgcccucggGGCCCAGGGCcccuagUCCAgaGGACg -3'
miRNA:   3'- -UCUCGua-------CCGGGUCUUG------AGGUa-CCUG- -5'
28778 3' -55.4 NC_006146.1 + 167817 0.7 0.726307
Target:  5'- --cGCGUGGCCCGcccccgggucuucccGGGCUCCcccucacggGUGGGCg -3'
miRNA:   3'- ucuCGUACCGGGU---------------CUUGAGG---------UACCUG- -5'
28778 3' -55.4 NC_006146.1 + 33324 0.7 0.712262
Target:  5'- uGGGGCuccggGGUCCGGGuGCUCCG-GGGCa -3'
miRNA:   3'- -UCUCGua---CCGGGUCU-UGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 25679 0.71 0.702145
Target:  5'- gGGAGCcgcccucggGGCCCAGGGCcccuagUCCAgaGGACg -3'
miRNA:   3'- -UCUCGua-------CCGGGUCUUG------AGGUa-CCUG- -5'
28778 3' -55.4 NC_006146.1 + 143270 0.72 0.6405
Target:  5'- uGAcGC-UGGCCCGGAACUUCccuggccacccaGUGGACc -3'
miRNA:   3'- uCU-CGuACCGGGUCUUGAGG------------UACCUG- -5'
28778 3' -55.4 NC_006146.1 + 51853 0.7 0.712262
Target:  5'- cGGGGCcUGGCCC-GAGC-CCggGGAUg -3'
miRNA:   3'- -UCUCGuACCGGGuCUUGaGGuaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 47719 0.72 0.6405
Target:  5'- gGGAGCAgcGCCCGGAGCUCgucguCcgGGGCc -3'
miRNA:   3'- -UCUCGUacCGGGUCUUGAG-----GuaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 22601 0.71 0.702145
Target:  5'- gGGAGCcgcccucggGGCCCAGGGCcccuagUCCAgaGGACg -3'
miRNA:   3'- -UCUCGua-------CCGGGUCUUG------AGGUa-CCUG- -5'
28778 3' -55.4 NC_006146.1 + 100249 0.7 0.722309
Target:  5'- gGGGGCGUucacGCaCgGGGGCUCCAUGGAg -3'
miRNA:   3'- -UCUCGUAc---CG-GgUCUUGAGGUACCUg -5'
28778 3' -55.4 NC_006146.1 + 169681 0.7 0.726307
Target:  5'- --cGCGUGGCCCGcccccgggucuucccGGGCUCCcccucacggGUGGGCg -3'
miRNA:   3'- ucuCGUACCGGGU---------------CUUGAGG---------UACCUG- -5'
28778 3' -55.4 NC_006146.1 + 149450 0.72 0.6405
Target:  5'- gAGAGCuugcGGCUCA--GCUCCGUGGAg -3'
miRNA:   3'- -UCUCGua--CCGGGUcuUGAGGUACCUg -5'
28778 3' -55.4 NC_006146.1 + 13367 0.71 0.702145
Target:  5'- gGGAGCcgcccucggGGCCCAGGGCcccuagUCCAgaGGACg -3'
miRNA:   3'- -UCUCGua-------CCGGGUCUUG------AGGUa-CCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.