miRNA display CGI


Results 1 - 20 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28778 3' -55.4 NC_006146.1 + 123459 1.1 0.002482
Target:  5'- gAGAGCAUGGCCCAGAACUCCAUGGACg -3'
miRNA:   3'- -UCUCGUACCGGGUCUUGAGGUACCUG- -5'
28778 3' -55.4 NC_006146.1 + 61844 0.78 0.303215
Target:  5'- uGGGGC-UGGUgCCGGGACUCCcgGGGCa -3'
miRNA:   3'- -UCUCGuACCG-GGUCUUGAGGuaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 39775 0.76 0.405955
Target:  5'- uGGAGuCAggcuugGGCCCGGAGCUCCcggcuucugGGACg -3'
miRNA:   3'- -UCUC-GUa-----CCGGGUCUUGAGGua-------CCUG- -5'
28778 3' -55.4 NC_006146.1 + 73534 0.74 0.508199
Target:  5'- --uGCAUGGCcaggcuCCGGAGCUCCccGGGCg -3'
miRNA:   3'- ucuCGUACCG------GGUCUUGAGGuaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 63251 0.73 0.548061
Target:  5'- uGGGGCaAUGGCCUccggGGGGCUCUAccUGGGCc -3'
miRNA:   3'- -UCUCG-UACCGGG----UCUUGAGGU--ACCUG- -5'
28778 3' -55.4 NC_006146.1 + 35628 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 34327 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 35163 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 35721 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 34977 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 35535 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 35442 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 35349 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 33955 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 34606 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 34792 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 34141 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 34885 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 35070 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 35256 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.