miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28778 3' -55.4 NC_006146.1 + 34699 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 35256 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 35163 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 34327 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 34885 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 34792 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 33863 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 33770 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 34606 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 34420 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 33955 0.73 0.568364
Target:  5'- aGGGGCAcccggcccccGGCCCcGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa---------CCGGGuCUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 120807 0.72 0.598116
Target:  5'- --cGCGUGGCCggacaagCGGGGCcgCCGUGGACg -3'
miRNA:   3'- ucuCGUACCGG-------GUCUUGa-GGUACCUG- -5'
28778 3' -55.4 NC_006146.1 + 33306 0.72 0.630151
Target:  5'- aGGGGCAcccGGCCCccggcccGAGCUCCA-GGACc -3'
miRNA:   3'- -UCUCGUa--CCGGGu------CUUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 165735 0.72 0.630151
Target:  5'- cGGGCcUGGCCaGGAACUUCAgcaGGGCg -3'
miRNA:   3'- uCUCGuACCGGgUCUUGAGGUa--CCUG- -5'
28778 3' -55.4 NC_006146.1 + 47719 0.72 0.6405
Target:  5'- gGGAGCAgcGCCCGGAGCUCgucguCcgGGGCc -3'
miRNA:   3'- -UCUCGUacCGGGUCUUGAG-----GuaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 149450 0.72 0.6405
Target:  5'- gAGAGCuugcGGCUCA--GCUCCGUGGAg -3'
miRNA:   3'- -UCUCGua--CCGGGUcuUGAGGUACCUg -5'
28778 3' -55.4 NC_006146.1 + 143270 0.72 0.6405
Target:  5'- uGAcGC-UGGCCCGGAACUUCccuggccacccaGUGGACc -3'
miRNA:   3'- uCU-CGuACCGGGUCUUGAGG------------UACCUG- -5'
28778 3' -55.4 NC_006146.1 + 25782 0.72 0.650841
Target:  5'- cAGAGCcUGGCCCAGGccuucuucaucuACgCCggGGACc -3'
miRNA:   3'- -UCUCGuACCGGGUCU------------UGaGGuaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 6430 0.71 0.661168
Target:  5'- cAGGGCcaugugGGCCCuGGGgUCCAUGGGg -3'
miRNA:   3'- -UCUCGua----CCGGGuCUUgAGGUACCUg -5'
28778 3' -55.4 NC_006146.1 + 25394 0.71 0.68174
Target:  5'- -cGGCAagGGCUacguCAGAGuCUCCGUGGACa -3'
miRNA:   3'- ucUCGUa-CCGG----GUCUU-GAGGUACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.