miRNA display CGI


Results 21 - 40 of 166 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28778 3' -55.4 NC_006146.1 + 63251 0.73 0.548061
Target:  5'- uGGGGCaAUGGCCUccggGGGGCUCUAccUGGGCc -3'
miRNA:   3'- -UCUCG-UACCGGG----UCUUGAGGU--ACCUG- -5'
28778 3' -55.4 NC_006146.1 + 85646 0.68 0.833996
Target:  5'- aGGGGCugguUGGCCCacgGGGAC-CCugGUGGAUg -3'
miRNA:   3'- -UCUCGu---ACCGGG---UCUUGaGG--UACCUG- -5'
28778 3' -55.4 NC_006146.1 + 123505 0.68 0.825517
Target:  5'- -cAGCAUGGCggCCAGAcGCUCCAacccguaGGACc -3'
miRNA:   3'- ucUCGUACCG--GGUCU-UGAGGUa------CCUG- -5'
28778 3' -55.4 NC_006146.1 + 110681 0.7 0.761611
Target:  5'- cAGAGCAUccgGGgCCAGAcAUUCCAccugcuguuugUGGACg -3'
miRNA:   3'- -UCUCGUA---CCgGGUCU-UGAGGU-----------ACCUG- -5'
28778 3' -55.4 NC_006146.1 + 81824 0.71 0.702145
Target:  5'- aGGAGcCGUGGCCCAacaccagcaGGCUCCAUacccGGGCu -3'
miRNA:   3'- -UCUC-GUACCGGGUc--------UUGAGGUA----CCUG- -5'
28778 3' -55.4 NC_006146.1 + 144232 0.67 0.893824
Target:  5'- -uAGCAUGGCUguGAGguuuguuCUCCA-GGGCu -3'
miRNA:   3'- ucUCGUACCGGguCUU-------GAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 118413 0.68 0.833996
Target:  5'- cGGAGCAUGGCgCAGcuucacGCUCa--GGACc -3'
miRNA:   3'- -UCUCGUACCGgGUCu-----UGAGguaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 19523 0.71 0.702145
Target:  5'- gGGAGCcgcccucggGGCCCAGGGCcccuagUCCAgaGGACg -3'
miRNA:   3'- -UCUCGua-------CCGGGUCUUG------AGGUa-CCUG- -5'
28778 3' -55.4 NC_006146.1 + 131462 0.69 0.789888
Target:  5'- aGGAGCAgGGCCCAGugcAC-CCAggUGGGu -3'
miRNA:   3'- -UCUCGUaCCGGGUCu--UGaGGU--ACCUg -5'
28778 3' -55.4 NC_006146.1 + 113683 0.69 0.771166
Target:  5'- cGGGCccgGGCCCGGc-CUCCGgcccggGGACg -3'
miRNA:   3'- uCUCGua-CCGGGUCuuGAGGUa-----CCUG- -5'
28778 3' -55.4 NC_006146.1 + 13367 0.71 0.702145
Target:  5'- gGGAGCcgcccucggGGCCCAGGGCcccuagUCCAgaGGACg -3'
miRNA:   3'- -UCUCGua-------CCGGGUCUUG------AGGUa-CCUG- -5'
28778 3' -55.4 NC_006146.1 + 156338 0.71 0.699098
Target:  5'- uGGGGCucacgccccgaaagcGGCCCAGcAGCUCCA-GGGCc -3'
miRNA:   3'- -UCUCGua-------------CCGGGUC-UUGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 167263 0.66 0.90737
Target:  5'- cGGGGag-GGCCCGGGGCcgCgCGUGGGg -3'
miRNA:   3'- -UCUCguaCCGGGUCUUGa-G-GUACCUg -5'
28778 3' -55.4 NC_006146.1 + 93694 0.67 0.894493
Target:  5'- uGGAgGCAUaGUCCAGGAggCCGUGGAg -3'
miRNA:   3'- -UCU-CGUAcCGGGUCUUgaGGUACCUg -5'
28778 3' -55.4 NC_006146.1 + 53892 0.68 0.825517
Target:  5'- uAGGGCGUaGCCCAGG--UCCA-GGGCc -3'
miRNA:   3'- -UCUCGUAcCGGGUCUugAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 100249 0.7 0.722309
Target:  5'- gGGGGCGUucacGCaCgGGGGCUCCAUGGAg -3'
miRNA:   3'- -UCUCGUAc---CG-GgUCUUGAGGUACCUg -5'
28778 3' -55.4 NC_006146.1 + 33324 0.7 0.712262
Target:  5'- uGGGGCuccggGGUCCGGGuGCUCCG-GGGCa -3'
miRNA:   3'- -UCUCGua---CCGGGUCU-UGAGGUaCCUG- -5'
28778 3' -55.4 NC_006146.1 + 126991 0.71 0.691968
Target:  5'- cGGGCGacgcGGuCCCGGAGCUCaUGUGGGCu -3'
miRNA:   3'- uCUCGUa---CC-GGGUCUUGAG-GUACCUG- -5'
28778 3' -55.4 NC_006146.1 + 49573 0.69 0.771166
Target:  5'- -cAGCAUGGCCUcGAugUCCuccaGGAUg -3'
miRNA:   3'- ucUCGUACCGGGuCUugAGGua--CCUG- -5'
28778 3' -55.4 NC_006146.1 + 69868 0.69 0.808028
Target:  5'- cGGGCGUagaGGCCCAGGuccACggCCGUGGuCc -3'
miRNA:   3'- uCUCGUA---CCGGGUCU---UGa-GGUACCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.