Results 21 - 40 of 166 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28778 | 3' | -55.4 | NC_006146.1 | + | 113683 | 0.69 | 0.771166 |
Target: 5'- cGGGCccgGGCCCGGc-CUCCGgcccggGGACg -3' miRNA: 3'- uCUCGua-CCGGGUCuuGAGGUa-----CCUG- -5' |
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28778 | 3' | -55.4 | NC_006146.1 | + | 90554 | 0.7 | 0.751938 |
Target: 5'- uGGAGCAgGGCCCGGGAgaagaCCcgGGAg -3' miRNA: 3'- -UCUCGUaCCGGGUCUUga---GGuaCCUg -5' |
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28778 | 3' | -55.4 | NC_006146.1 | + | 25679 | 0.71 | 0.702145 |
Target: 5'- gGGAGCcgcccucggGGCCCAGGGCcccuagUCCAgaGGACg -3' miRNA: 3'- -UCUCGua-------CCGGGUCUUG------AGGUa-CCUG- -5' |
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28778 | 3' | -55.4 | NC_006146.1 | + | 149450 | 0.72 | 0.6405 |
Target: 5'- gAGAGCuugcGGCUCA--GCUCCGUGGAg -3' miRNA: 3'- -UCUCGua--CCGGGUcuUGAGGUACCUg -5' |
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28778 | 3' | -55.4 | NC_006146.1 | + | 155559 | 0.68 | 0.858276 |
Target: 5'- uGGAGCcgGGCUCgcgcGGGGCgcccgCCAgGGGCa -3' miRNA: 3'- -UCUCGuaCCGGG----UCUUGa----GGUaCCUG- -5' |
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28778 | 3' | -55.4 | NC_006146.1 | + | 40733 | 0.68 | 0.825517 |
Target: 5'- cGGGCAggcgGGCCCgugcuuGGGGCUggCCAcGGACg -3' miRNA: 3'- uCUCGUa---CCGGG------UCUUGA--GGUaCCUG- -5' |
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28778 | 3' | -55.4 | NC_006146.1 | + | 168749 | 0.7 | 0.726307 |
Target: 5'- --cGCGUGGCCCGcccccgggucuucccGGGCUCCcccucacggGUGGGCg -3' miRNA: 3'- ucuCGUACCGGGU---------------CUUGAGG---------UACCUG- -5' |
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28778 | 3' | -55.4 | NC_006146.1 | + | 47719 | 0.72 | 0.6405 |
Target: 5'- gGGAGCAgcGCCCGGAGCUCgucguCcgGGGCc -3' miRNA: 3'- -UCUCGUacCGGGUCUUGAG-----GuaCCUG- -5' |
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28778 | 3' | -55.4 | NC_006146.1 | + | 3063 | 0.68 | 0.816859 |
Target: 5'- gAGAGCGcguUGGCCCAGGcuACcgUCCAgaccgcucUGGAg -3' miRNA: 3'- -UCUCGU---ACCGGGUCU--UG--AGGU--------ACCUg -5' |
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28778 | 3' | -55.4 | NC_006146.1 | + | 143270 | 0.72 | 0.6405 |
Target: 5'- uGAcGC-UGGCCCGGAACUUCccuggccacccaGUGGACc -3' miRNA: 3'- uCU-CGuACCGGGUCUUGAGG------------UACCUG- -5' |
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28778 | 3' | -55.4 | NC_006146.1 | + | 169681 | 0.7 | 0.726307 |
Target: 5'- --cGCGUGGCCCGcccccgggucuucccGGGCUCCcccucacggGUGGGCg -3' miRNA: 3'- ucuCGUACCGGGU---------------CUUGAGG---------UACCUG- -5' |
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28778 | 3' | -55.4 | NC_006146.1 | + | 34035 | 0.69 | 0.771166 |
Target: 5'- cGGGCGUGGuCCCGGGGC-CUAUGccGGCc -3' miRNA: 3'- uCUCGUACC-GGGUCUUGaGGUAC--CUG- -5' |
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28778 | 3' | -55.4 | NC_006146.1 | + | 51853 | 0.7 | 0.712262 |
Target: 5'- cGGGGCcUGGCCC-GAGC-CCggGGAUg -3' miRNA: 3'- -UCUCGuACCGGGuCUUGaGGuaCCUG- -5' |
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28778 | 3' | -55.4 | NC_006146.1 | + | 28757 | 0.71 | 0.702145 |
Target: 5'- gGGAGCcgcccucggGGCCCAGGGCcccuagUCCAgaGGACg -3' miRNA: 3'- -UCUCGua-------CCGGGUCUUG------AGGUa-CCUG- -5' |
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28778 | 3' | -55.4 | NC_006146.1 | + | 16445 | 0.71 | 0.702145 |
Target: 5'- gGGAGCcgcccucggGGCCCAGGGCcccuagUCCAgaGGACg -3' miRNA: 3'- -UCUCGua-------CCGGGUCUUG------AGGUa-CCUG- -5' |
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28778 | 3' | -55.4 | NC_006146.1 | + | 126991 | 0.71 | 0.691968 |
Target: 5'- cGGGCGacgcGGuCCCGGAGCUCaUGUGGGCu -3' miRNA: 3'- uCUCGUa---CC-GGGUCUUGAG-GUACCUG- -5' |
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28778 | 3' | -55.4 | NC_006146.1 | + | 92491 | 0.66 | 0.90105 |
Target: 5'- gGGAGgucCAgaagGGCCCAGcGGCUCCuaucagaGGACg -3' miRNA: 3'- -UCUC---GUa---CCGGGUC-UUGAGGua-----CCUG- -5' |
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28778 | 3' | -55.4 | NC_006146.1 | + | 146851 | 0.67 | 0.886315 |
Target: 5'- cGGGCcUGGCUCGGGGCcgcgucaccccgCCAgggGGACg -3' miRNA: 3'- uCUCGuACCGGGUCUUGa-----------GGUa--CCUG- -5' |
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28778 | 3' | -55.4 | NC_006146.1 | + | 41038 | 0.68 | 0.833996 |
Target: 5'- gGGAGgAgGGCCUAGGACagcuUCCGaGGGCu -3' miRNA: 3'- -UCUCgUaCCGGGUCUUG----AGGUaCCUG- -5' |
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28778 | 3' | -55.4 | NC_006146.1 | + | 53892 | 0.68 | 0.825517 |
Target: 5'- uAGGGCGUaGCCCAGG--UCCA-GGGCc -3' miRNA: 3'- -UCUCGUAcCGGGUCUugAGGUaCCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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