miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28779 3' -62.9 NC_006146.1 + 123177 1.08 0.001132
Target:  5'- gCCCCGGACGACGAGCUCCGGGCGCUGc -3'
miRNA:   3'- -GGGGCCUGCUGCUCGAGGCCCGCGAC- -5'
28779 3' -62.9 NC_006146.1 + 99910 0.86 0.042291
Target:  5'- cCCCCGGGCGcaagaGCGGGCUCCGGGuCGCa- -3'
miRNA:   3'- -GGGGCCUGC-----UGCUCGAGGCCC-GCGac -5'
28779 3' -62.9 NC_006146.1 + 72459 0.84 0.053143
Target:  5'- cCCCCGGGCGGCGccgaaaccGGUUCUGGGCGCUu -3'
miRNA:   3'- -GGGGCCUGCUGC--------UCGAGGCCCGCGAc -5'
28779 3' -62.9 NC_006146.1 + 91290 0.78 0.13646
Target:  5'- uCCCCGG--GACGAGCUcaCCGGuGCGCUGu -3'
miRNA:   3'- -GGGGCCugCUGCUCGA--GGCC-CGCGAC- -5'
28779 3' -62.9 NC_006146.1 + 117994 0.76 0.201292
Target:  5'- cCCCCGGGgGGCcacgcagaccaugcgGGGCUCgGGGCGCg- -3'
miRNA:   3'- -GGGGCCUgCUG---------------CUCGAGgCCCGCGac -5'
28779 3' -62.9 NC_006146.1 + 53946 0.75 0.228948
Target:  5'- gUCCGGACGcAgGGGCUCaCGGGCGUUu -3'
miRNA:   3'- gGGGCCUGC-UgCUCGAG-GCCCGCGAc -5'
28779 3' -62.9 NC_006146.1 + 295 0.74 0.250617
Target:  5'- aCCCGGG-GGCGGGC-CCGGcGCGCUc -3'
miRNA:   3'- gGGGCCUgCUGCUCGaGGCC-CGCGAc -5'
28779 3' -62.9 NC_006146.1 + 39672 0.74 0.256292
Target:  5'- gCCuuGGagGCGGCGGGCUCCuGGGC-CUGc -3'
miRNA:   3'- -GGggCC--UGCUGCUCGAGG-CCCGcGAC- -5'
28779 3' -62.9 NC_006146.1 + 162620 0.74 0.256292
Target:  5'- aCCCCGGGaGugGGGCUCCcagagagaacggGGGUGCa- -3'
miRNA:   3'- -GGGGCCUgCugCUCGAGG------------CCCGCGac -5'
28779 3' -62.9 NC_006146.1 + 51827 0.74 0.267958
Target:  5'- uCCCCgGGGCGGCGuggaggggGGCUCgGGGC-CUGg -3'
miRNA:   3'- -GGGG-CCUGCUGC--------UCGAGgCCCGcGAC- -5'
28779 3' -62.9 NC_006146.1 + 48630 0.74 0.267958
Target:  5'- -gCCGuGGgGGCGGGCUCCGGGCGg-- -3'
miRNA:   3'- ggGGC-CUgCUGCUCGAGGCCCGCgac -5'
28779 3' -62.9 NC_006146.1 + 101957 0.73 0.286255
Target:  5'- cCCCCuGGCuAgGGGCUCCGGGCuCUGg -3'
miRNA:   3'- -GGGGcCUGcUgCUCGAGGCCCGcGAC- -5'
28779 3' -62.9 NC_006146.1 + 48971 0.73 0.292569
Target:  5'- uUCCCGGG-GAUGAGCgUCUGGGagaGCUGa -3'
miRNA:   3'- -GGGGCCUgCUGCUCG-AGGCCCg--CGAC- -5'
28779 3' -62.9 NC_006146.1 + 123033 0.73 0.292569
Target:  5'- -gCCGaGGCGGCccAGgUCCGGGCGCUGg -3'
miRNA:   3'- ggGGC-CUGCUGc-UCgAGGCCCGCGAC- -5'
28779 3' -62.9 NC_006146.1 + 16196 0.73 0.292569
Target:  5'- gCCCUGGugGGCu-GCaUCUGGGCGCa- -3'
miRNA:   3'- -GGGGCCugCUGcuCG-AGGCCCGCGac -5'
28779 3' -62.9 NC_006146.1 + 126935 0.73 0.298991
Target:  5'- uCCCgcuggcaGGAUGGCGcuCUCCGGGCGCg- -3'
miRNA:   3'- -GGGg------CCUGCUGCucGAGGCCCGCGac -5'
28779 3' -62.9 NC_006146.1 + 103554 0.73 0.305522
Target:  5'- aCCCGGACcccgagGAUGGGCUcgcCCGGGC-CUGg -3'
miRNA:   3'- gGGGCCUG------CUGCUCGA---GGCCCGcGAC- -5'
28779 3' -62.9 NC_006146.1 + 117240 0.73 0.305522
Target:  5'- aCCUGGGCaa-GAGCgucugUCGGGCGCUGa -3'
miRNA:   3'- gGGGCCUGcugCUCGa----GGCCCGCGAC- -5'
28779 3' -62.9 NC_006146.1 + 44546 0.72 0.346995
Target:  5'- aUCCUGGAaaaggGGCcgGGGCUCCGGGUgGCUGg -3'
miRNA:   3'- -GGGGCCUg----CUG--CUCGAGGCCCG-CGAC- -5'
28779 3' -62.9 NC_006146.1 + 170503 0.72 0.346995
Target:  5'- uCCCCGGacccccagcgcGCGGCGGGCggggCCugaggGGGCGCg- -3'
miRNA:   3'- -GGGGCC-----------UGCUGCUCGa---GG-----CCCGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.