miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28779 3' -62.9 NC_006146.1 + 99910 0.86 0.042291
Target:  5'- cCCCCGGGCGcaagaGCGGGCUCCGGGuCGCa- -3'
miRNA:   3'- -GGGGCCUGC-----UGCUCGAGGCCC-GCGac -5'
28779 3' -62.9 NC_006146.1 + 135773 0.71 0.384521
Target:  5'- gCCCCGcuccGGCGGgGGGUggCCGGGcCGCUGc -3'
miRNA:   3'- -GGGGC----CUGCUgCUCGa-GGCCC-GCGAC- -5'
28779 3' -62.9 NC_006146.1 + 135959 0.71 0.384521
Target:  5'- gCCCCGcuccGGCGGgGGGUggCCGGGcCGCUGc -3'
miRNA:   3'- -GGGGC----CUGCUgCUCGa-GGCCC-GCGAC- -5'
28779 3' -62.9 NC_006146.1 + 87365 0.66 0.691232
Target:  5'- -aCUGGAUGACaAGCUgUGGGCcCUGa -3'
miRNA:   3'- ggGGCCUGCUGcUCGAgGCCCGcGAC- -5'
28779 3' -62.9 NC_006146.1 + 101957 0.73 0.286255
Target:  5'- cCCCCuGGCuAgGGGCUCCGGGCuCUGg -3'
miRNA:   3'- -GGGGcCUGcUgCUCGAGGCCCGcGAC- -5'
28779 3' -62.9 NC_006146.1 + 48971 0.73 0.292569
Target:  5'- uUCCCGGG-GAUGAGCgUCUGGGagaGCUGa -3'
miRNA:   3'- -GGGGCCUgCUGCUCG-AGGCCCg--CGAC- -5'
28779 3' -62.9 NC_006146.1 + 170503 0.72 0.346995
Target:  5'- uCCCCGGacccccagcgcGCGGCGGGCggggCCugaggGGGCGCg- -3'
miRNA:   3'- -GGGGCC-----------UGCUGCUCGa---GG-----CCCGCGac -5'
28779 3' -62.9 NC_006146.1 + 41607 0.72 0.354286
Target:  5'- gCCCGGGgGGCugguccgcuGGGC-CCGGGCGCa- -3'
miRNA:   3'- gGGGCCUgCUG---------CUCGaGGCCCGCGac -5'
28779 3' -62.9 NC_006146.1 + 135216 0.71 0.384521
Target:  5'- gCCCCGcuccGGCGGgGGGUggCCGGGcCGCUGc -3'
miRNA:   3'- -GGGGC----CUGCUgCUCGa-GGCCC-GCGAC- -5'
28779 3' -62.9 NC_006146.1 + 135681 0.71 0.384521
Target:  5'- gCCCCGcuccGGCGGgGGGUggCCGGGcCGCUGc -3'
miRNA:   3'- -GGGGC----CUGCUgCUCGa-GGCCC-GCGAC- -5'
28779 3' -62.9 NC_006146.1 + 135402 0.71 0.384521
Target:  5'- gCCCCGcuccGGCGGgGGGUggCCGGGcCGCUGc -3'
miRNA:   3'- -GGGGC----CUGCUgCUCGa-GGCCC-GCGAC- -5'
28779 3' -62.9 NC_006146.1 + 49513 0.71 0.384521
Target:  5'- aUCUGGAuCGGCGGGUgaUCCGGGgGCUc -3'
miRNA:   3'- gGGGCCU-GCUGCUCG--AGGCCCgCGAc -5'
28779 3' -62.9 NC_006146.1 + 53946 0.75 0.228948
Target:  5'- gUCCGGACGcAgGGGCUCaCGGGCGUUu -3'
miRNA:   3'- gGGGCCUGC-UgCUCGAG-GCCCGCGAc -5'
28779 3' -62.9 NC_006146.1 + 135495 0.71 0.384521
Target:  5'- gCCCCGcuccGGCGGgGGGUggCCGGGcCGCUGc -3'
miRNA:   3'- -GGGGC----CUGCUgCUCGa-GGCCC-GCGAC- -5'
28779 3' -62.9 NC_006146.1 + 48630 0.74 0.267958
Target:  5'- -gCCGuGGgGGCGGGCUCCGGGCGg-- -3'
miRNA:   3'- ggGGC-CUgCUGCUCGAGGCCCGCgac -5'
28779 3' -62.9 NC_006146.1 + 68170 0.72 0.354286
Target:  5'- uCCCCGGGCaGGCGcAGCgucaggaCgCGGGCGCa- -3'
miRNA:   3'- -GGGGCCUG-CUGC-UCGa------G-GCCCGCGac -5'
28779 3' -62.9 NC_006146.1 + 135588 0.71 0.384521
Target:  5'- gCCCCGcuccGGCGGgGGGUggCCGGGcCGCUGc -3'
miRNA:   3'- -GGGGC----CUGCUgCUCGa-GGCCC-GCGAC- -5'
28779 3' -62.9 NC_006146.1 + 135866 0.71 0.384521
Target:  5'- gCCCCGcuccGGCGGgGGGUggCCGGGcCGCUGc -3'
miRNA:   3'- -GGGGC----CUGCUgCUCGa-GGCCC-GCGAC- -5'
28779 3' -62.9 NC_006146.1 + 51827 0.74 0.267958
Target:  5'- uCCCCgGGGCGGCGuggaggggGGCUCgGGGC-CUGg -3'
miRNA:   3'- -GGGG-CCUGCUGC--------UCGAGgCCCGcGAC- -5'
28779 3' -62.9 NC_006146.1 + 126935 0.73 0.298991
Target:  5'- uCCCgcuggcaGGAUGGCGcuCUCCGGGCGCg- -3'
miRNA:   3'- -GGGg------CCUGCUGCucGAGGCCCGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.