miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28779 3' -62.9 NC_006146.1 + 295 0.74 0.250617
Target:  5'- aCCCGGG-GGCGGGC-CCGGcGCGCUc -3'
miRNA:   3'- gGGGCCUgCUGCUCGaGGCC-CGCGAc -5'
28779 3' -62.9 NC_006146.1 + 5200 0.66 0.66276
Target:  5'- uCCCUGGGCcugGGgGAGCUagGGGUGCa- -3'
miRNA:   3'- -GGGGCCUG---CUgCUCGAggCCCGCGac -5'
28779 3' -62.9 NC_006146.1 + 8431 0.66 0.643658
Target:  5'- aCCCUGGG-GACcaggaGAGCUCgGGGgcgaGCUGa -3'
miRNA:   3'- -GGGGCCUgCUG-----CUCGAGgCCCg---CGAC- -5'
28779 3' -62.9 NC_006146.1 + 8522 0.66 0.672281
Target:  5'- gUCCCGGGCG-CGGGCgcgCCaaGGG-GCUc -3'
miRNA:   3'- -GGGGCCUGCuGCUCGa--GG--CCCgCGAc -5'
28779 3' -62.9 NC_006146.1 + 12265 0.71 0.392342
Target:  5'- -gCCGGACGAUGAGCcCCGcuacaccuacuGGCaGCUGa -3'
miRNA:   3'- ggGGCCUGCUGCUCGaGGC-----------CCG-CGAC- -5'
28779 3' -62.9 NC_006146.1 + 12813 0.7 0.458473
Target:  5'- --aCGGACGGCG-GCUgCCGGuGCGCa- -3'
miRNA:   3'- gggGCCUGCUGCuCGA-GGCC-CGCGac -5'
28779 3' -62.9 NC_006146.1 + 13182 0.71 0.400266
Target:  5'- gCCCGGccugccCGGCcucGCUCCGGGCGCc- -3'
miRNA:   3'- gGGGCCu-----GCUGcu-CGAGGCCCGCGac -5'
28779 3' -62.9 NC_006146.1 + 13558 0.69 0.484767
Target:  5'- gCgCCGGGCGcCGGGCUgcgcaagcaggCCGGGgGCUc -3'
miRNA:   3'- -GgGGCCUGCuGCUCGA-----------GGCCCgCGAc -5'
28779 3' -62.9 NC_006146.1 + 14913 0.7 0.42464
Target:  5'- cCCCCGGAggUGGCgGAGCUCuCGGaGCuGCUc -3'
miRNA:   3'- -GGGGCCU--GCUG-CUCGAG-GCC-CG-CGAc -5'
28779 3' -62.9 NC_006146.1 + 16196 0.73 0.292569
Target:  5'- gCCCUGGugGGCu-GCaUCUGGGCGCa- -3'
miRNA:   3'- -GGGGCCugCUGcuCG-AGGCCCGCGac -5'
28779 3' -62.9 NC_006146.1 + 16260 0.71 0.400266
Target:  5'- gCCCGGccugccCGGCcucGCUCCGGGCGCc- -3'
miRNA:   3'- gGGGCCu-----GCUGcu-CGAGGCCCGCGac -5'
28779 3' -62.9 NC_006146.1 + 17592 0.67 0.624525
Target:  5'- -gCUGGGCGACcuGGC-CCGGGC-CUGg -3'
miRNA:   3'- ggGGCCUGCUGc-UCGaGGCCCGcGAC- -5'
28779 3' -62.9 NC_006146.1 + 18084 0.68 0.530097
Target:  5'- uCCCUGGagcuguacucgcGCGACGAGCagCGGGC-CUc -3'
miRNA:   3'- -GGGGCC------------UGCUGCUCGagGCCCGcGAc -5'
28779 3' -62.9 NC_006146.1 + 19338 0.71 0.400266
Target:  5'- gCCCGGccugccCGGCcucGCUCCGGGCGCc- -3'
miRNA:   3'- gGGGCCu-----GCUGcu-CGAGGCCCGCGac -5'
28779 3' -62.9 NC_006146.1 + 20593 0.68 0.552408
Target:  5'- gCCCGGGCGAgGAcuacgaguccuucagGCUcaCCGGGgGCa- -3'
miRNA:   3'- gGGGCCUGCUgCU---------------CGA--GGCCCgCGac -5'
28779 3' -62.9 NC_006146.1 + 22416 0.71 0.400266
Target:  5'- gCCCGGccugccCGGCcucGCUCCGGGCGCc- -3'
miRNA:   3'- gGGGCCu-----GCUGcu-CGAGGCCCGCGac -5'
28779 3' -62.9 NC_006146.1 + 25494 0.71 0.400266
Target:  5'- gCCCGGccugccCGGCcucGCUCCGGGCGCc- -3'
miRNA:   3'- gGGGCCu-----GCUGcu-CGAGGCCCGCGac -5'
28779 3' -62.9 NC_006146.1 + 28572 0.71 0.400266
Target:  5'- gCCCGGccugccCGGCcucGCUCCGGGCGCc- -3'
miRNA:   3'- gGGGCCu-----GCUGcu-CGAGGCCCGCGac -5'
28779 3' -62.9 NC_006146.1 + 32057 0.7 0.441373
Target:  5'- aCCCGGGCGugGCGAGCaUCGGucaGCUGa -3'
miRNA:   3'- gGGGCCUGC--UGCUCGaGGCCcg-CGAC- -5'
28779 3' -62.9 NC_006146.1 + 33109 0.67 0.585418
Target:  5'- -gCCGGGuggccgcCGGCGGGUucgCCGGGcCGCUGc -3'
miRNA:   3'- ggGGCCU-------GCUGCUCGa--GGCCC-GCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.