miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28779 5' -56.9 NC_006146.1 + 162392 0.66 0.874129
Target:  5'- -cCCGCGCCCGGGaCC-CCGgugggCCAgGa -3'
miRNA:   3'- aaGGUGCGGGUUCaGGaGGUa----GGUgC- -5'
28779 5' -56.9 NC_006146.1 + 158132 0.68 0.792332
Target:  5'- -gCCGCGUCCAGGUCCggCAggUCACa -3'
miRNA:   3'- aaGGUGCGGGUUCAGGagGUa-GGUGc -5'
28779 5' -56.9 NC_006146.1 + 157811 0.69 0.745599
Target:  5'- -gCCAgGUCCGAGUaCUCC-UCCGCGc -3'
miRNA:   3'- aaGGUgCGGGUUCAgGAGGuAGGUGC- -5'
28779 5' -56.9 NC_006146.1 + 157774 0.66 0.881235
Target:  5'- cUCCucguGgGCCCGGGagCCcCCGUCCACa -3'
miRNA:   3'- aAGG----UgCGGGUUCa-GGaGGUAGGUGc -5'
28779 5' -56.9 NC_006146.1 + 156076 0.66 0.888122
Target:  5'- -cCCGgGCCCGAGaccgugcccUCCUCCggCC-CGg -3'
miRNA:   3'- aaGGUgCGGGUUC---------AGGAGGuaGGuGC- -5'
28779 5' -56.9 NC_006146.1 + 154977 0.66 0.881235
Target:  5'- -gCCuCGCCCAGGcgCCUCCucggGUCCGg- -3'
miRNA:   3'- aaGGuGCGGGUUCa-GGAGG----UAGGUgc -5'
28779 5' -56.9 NC_006146.1 + 151899 0.66 0.881235
Target:  5'- -gCCuCGCCCAGGcgCCUCCucggGUCCGg- -3'
miRNA:   3'- aaGGuGCGGGUUCa-GGAGG----UAGGUgc -5'
28779 5' -56.9 NC_006146.1 + 149278 0.68 0.76465
Target:  5'- cUCCGCGUaggCCGGGUCCUcggCCAUCUcCGu -3'
miRNA:   3'- aAGGUGCG---GGUUCAGGA---GGUAGGuGC- -5'
28779 5' -56.9 NC_006146.1 + 148821 0.66 0.881235
Target:  5'- -gCCuCGCCCAGGcgCCUCCucggGUCCGg- -3'
miRNA:   3'- aaGGuGCGGGUUCa-GGAGG----UAGGUgc -5'
28779 5' -56.9 NC_006146.1 + 146709 0.66 0.894786
Target:  5'- cUCgCAgGCCCAGcccUCCUCUgcccuGUCCACGu -3'
miRNA:   3'- aAG-GUgCGGGUUc--AGGAGG-----UAGGUGC- -5'
28779 5' -56.9 NC_006146.1 + 145743 0.66 0.881235
Target:  5'- -gCCuCGCCCAGGcgCCUCCucggGUCCGg- -3'
miRNA:   3'- aaGGuGCGGGUUCa-GGAGG----UAGGUgc -5'
28779 5' -56.9 NC_006146.1 + 142666 0.66 0.881235
Target:  5'- -gCCuCGCCCAGGcgCCUCCucggGUCCGg- -3'
miRNA:   3'- aaGGuGCGGGUUCa-GGAGG----UAGGUgc -5'
28779 5' -56.9 NC_006146.1 + 141074 0.67 0.827205
Target:  5'- -cCCugGCUCAAGUUCUCauuUCCAa- -3'
miRNA:   3'- aaGGugCGGGUUCAGGAGgu-AGGUgc -5'
28779 5' -56.9 NC_006146.1 + 129845 0.67 0.835505
Target:  5'- cUCCAC-CCCGAGgCCcCCAgggccgCCGCGg -3'
miRNA:   3'- aAGGUGcGGGUUCaGGaGGUa-----GGUGC- -5'
28779 5' -56.9 NC_006146.1 + 129622 0.68 0.801285
Target:  5'- cUCCGuCG-CCGGGUCCUCCGcgggcgcgugcUCCGCc -3'
miRNA:   3'- aAGGU-GCgGGUUCAGGAGGU-----------AGGUGc -5'
28779 5' -56.9 NC_006146.1 + 123467 0.66 0.859281
Target:  5'- -gUCAggUGCCCcAGcUCCUCCAUCCuaACGg -3'
miRNA:   3'- aaGGU--GCGGGuUC-AGGAGGUAGG--UGC- -5'
28779 5' -56.9 NC_006146.1 + 123214 1.07 0.003577
Target:  5'- cUUCCACGCCCAAGUCCUCCAUCCACGa -3'
miRNA:   3'- -AAGGUGCGGGUUCAGGAGGUAGGUGC- -5'
28779 5' -56.9 NC_006146.1 + 123010 0.72 0.554887
Target:  5'- cUCCagagagagGCGCCCAAGgaaC-CCGUCCACGg -3'
miRNA:   3'- aAGG--------UGCGGGUUCag-GaGGUAGGUGC- -5'
28779 5' -56.9 NC_006146.1 + 122687 0.66 0.888122
Target:  5'- -cCCagGCGCgCCAGGcCCUCCAgUCCcCGg -3'
miRNA:   3'- aaGG--UGCG-GGUUCaGGAGGU-AGGuGC- -5'
28779 5' -56.9 NC_006146.1 + 119183 0.68 0.801285
Target:  5'- -gCCGCcucCCCAuGUCCUCCA-CCACc -3'
miRNA:   3'- aaGGUGc--GGGUuCAGGAGGUaGGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.