Results 41 - 44 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28781 | 3' | -55.6 | NC_006146.1 | + | 117873 | 0.7 | 0.753573 |
Target: 5'- aGCGGCUGaGAuggGCACCCgaggCUGGUCaUCg -3' miRNA: 3'- cUGCUGAC-CU---UGUGGGaa--GACCGG-AG- -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 105091 | 0.7 | 0.743894 |
Target: 5'- aGCGcCUGGcGCAgCUCgucUCUGGCCUCg -3' miRNA: 3'- cUGCuGACCuUGU-GGGa--AGACCGGAG- -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 57997 | 0.71 | 0.704288 |
Target: 5'- gGACGAgCUGGAG-GCCCgggUCUcGGCCUUc -3' miRNA: 3'- -CUGCU-GACCUUgUGGGa--AGA-CCGGAG- -5' |
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28781 | 3' | -55.6 | NC_006146.1 | + | 118055 | 0.66 | 0.929553 |
Target: 5'- aGGCGuaGCUGGAGgGCCCcaugaUCUGguugucaGCCUCu -3' miRNA: 3'- -CUGC--UGACCUUgUGGGa----AGAC-------CGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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