miRNA display CGI


Results 1 - 20 of 321 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28782 5' -54.1 NC_006146.1 + 122101 1.12 0.003322
Target:  5'- aCCGCCCCCAACAAAGAGCUGAAGCGGc -3'
miRNA:   3'- -GGCGGGGGUUGUUUCUCGACUUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 127713 0.85 0.17414
Target:  5'- cCCGCCUCCcGCGAGGAGCUGAuggGGCuGGg -3'
miRNA:   3'- -GGCGGGGGuUGUUUCUCGACU---UCG-CC- -5'
28782 5' -54.1 NC_006146.1 + 47221 0.83 0.245855
Target:  5'- gCCGCCUCCGccACGAucuuGAGCUGgcGCGGg -3'
miRNA:   3'- -GGCGGGGGU--UGUUu---CUCGACuuCGCC- -5'
28782 5' -54.1 NC_006146.1 + 56263 0.8 0.340413
Target:  5'- gCCGUCCUCGGCGGGGAGCgagGAGGCcaGGa -3'
miRNA:   3'- -GGCGGGGGUUGUUUCUCGa--CUUCG--CC- -5'
28782 5' -54.1 NC_006146.1 + 109176 0.77 0.493426
Target:  5'- cCCGgCCCUuagucugaggcccaGACAGAGGGCUGGacuGGCGGc -3'
miRNA:   3'- -GGCgGGGG--------------UUGUUUCUCGACU---UCGCC- -5'
28782 5' -54.1 NC_006146.1 + 124941 0.77 0.496298
Target:  5'- gCUGCCCCgGGCAGAGAGCgucGAGGUc- -3'
miRNA:   3'- -GGCGGGGgUUGUUUCUCGa--CUUCGcc -5'
28782 5' -54.1 NC_006146.1 + 149333 0.76 0.545175
Target:  5'- -gGCCCaggGGCGAGGGGaCUGAGGCGGg -3'
miRNA:   3'- ggCGGGgg-UUGUUUCUC-GACUUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 155489 0.76 0.545175
Target:  5'- -gGCCCaggGGCGAGGGGaCUGAGGCGGg -3'
miRNA:   3'- ggCGGGgg-UUGUUUCUC-GACUUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 152411 0.76 0.545175
Target:  5'- -gGCCCaggGGCGAGGGGaCUGAGGCGGg -3'
miRNA:   3'- ggCGGGgg-UUGUUUCUC-GACUUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 74089 0.76 0.545175
Target:  5'- cCCGUCCCCAcCAGGGAagccugcaGCUGAgacuccauggAGCGGa -3'
miRNA:   3'- -GGCGGGGGUuGUUUCU--------CGACU----------UCGCC- -5'
28782 5' -54.1 NC_006146.1 + 143177 0.76 0.545175
Target:  5'- -gGCCCaggGGCGAGGGGaCUGAGGCGGg -3'
miRNA:   3'- ggCGGGgg-UUGUUUCUC-GACUUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 146255 0.76 0.545175
Target:  5'- -gGCCCaggGGCGAGGGGaCUGAGGCGGg -3'
miRNA:   3'- ggCGGGgg-UUGUUUCUC-GACUUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 158568 0.76 0.545175
Target:  5'- -gGCCCaggGGCGAGGGGaCUGAGGCGGg -3'
miRNA:   3'- ggCGGGgg-UUGUUUCUC-GACUUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 27914 0.76 0.555148
Target:  5'- gCUGCUCCCAcgGCcAAGGGCUaGGGCGGa -3'
miRNA:   3'- -GGCGGGGGU--UGuUUCUCGAcUUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 73675 0.75 0.565173
Target:  5'- gUGuCCCCCAGCu-GGAGCUuGggGUGGu -3'
miRNA:   3'- gGC-GGGGGUUGuuUCUCGA-CuuCGCC- -5'
28782 5' -54.1 NC_006146.1 + 42958 0.75 0.585356
Target:  5'- uCCGCCCCgGGCAc---GCUGAGcGCGGa -3'
miRNA:   3'- -GGCGGGGgUUGUuucuCGACUU-CGCC- -5'
28782 5' -54.1 NC_006146.1 + 68722 0.75 0.585356
Target:  5'- gCGUCCCCG----AGAGCUGucGCGGg -3'
miRNA:   3'- gGCGGGGGUuguuUCUCGACuuCGCC- -5'
28782 5' -54.1 NC_006146.1 + 62414 0.75 0.585356
Target:  5'- uCCGgaaCCCCGGguGGGcuGGCUGAAGCGGc -3'
miRNA:   3'- -GGCg--GGGGUUguUUC--UCGACUUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 45229 0.75 0.605674
Target:  5'- aCGCCgCCCAGCuGAAGcGGCUG-AGUGGg -3'
miRNA:   3'- gGCGG-GGGUUG-UUUC-UCGACuUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 139156 0.75 0.605674
Target:  5'- cCCGuCCCCCGGgGGGGcGCcugUGAGGCGGc -3'
miRNA:   3'- -GGC-GGGGGUUgUUUCuCG---ACUUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.