miRNA display CGI


Results 1 - 20 of 321 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28782 5' -54.1 NC_006146.1 + 111024 0.72 0.765601
Target:  5'- -gGCCUUUAGCAcGGAGCUGAugGGCGa -3'
miRNA:   3'- ggCGGGGGUUGUuUCUCGACU--UCGCc -5'
28782 5' -54.1 NC_006146.1 + 127713 0.85 0.17414
Target:  5'- cCCGCCUCCcGCGAGGAGCUGAuggGGCuGGg -3'
miRNA:   3'- -GGCGGGGGuUGUUUCUCGACU---UCG-CC- -5'
28782 5' -54.1 NC_006146.1 + 47221 0.83 0.245855
Target:  5'- gCCGCCUCCGccACGAucuuGAGCUGgcGCGGg -3'
miRNA:   3'- -GGCGGGGGU--UGUUu---CUCGACuuCGCC- -5'
28782 5' -54.1 NC_006146.1 + 99700 0.73 0.676999
Target:  5'- -aGCCCCCGGCgGGAGugaggaucuucaGGCUGAcGCGGu -3'
miRNA:   3'- ggCGGGGGUUG-UUUC------------UCGACUuCGCC- -5'
28782 5' -54.1 NC_006146.1 + 101554 0.73 0.687109
Target:  5'- aCGUCCCCAucuccgagACGGuGGAGCUGGAGuUGGa -3'
miRNA:   3'- gGCGGGGGU--------UGUU-UCUCGACUUC-GCC- -5'
28782 5' -54.1 NC_006146.1 + 56263 0.8 0.340413
Target:  5'- gCCGUCCUCGGCGGGGAGCgagGAGGCcaGGa -3'
miRNA:   3'- -GGCGGGGGUUGUUUCUCGa--CUUCG--CC- -5'
28782 5' -54.1 NC_006146.1 + 139156 0.75 0.605674
Target:  5'- cCCGuCCCCCGGgGGGGcGCcugUGAGGCGGc -3'
miRNA:   3'- -GGC-GGGGGUUgUUUCuCG---ACUUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 57560 0.74 0.645464
Target:  5'- uCCaGCCCCUAcauauaGAGGAGCUGAccuucggGGCGGu -3'
miRNA:   3'- -GG-CGGGGGUug----UUUCUCGACU-------UCGCC- -5'
28782 5' -54.1 NC_006146.1 + 44299 0.72 0.756106
Target:  5'- aCCGCCaaaCCggUAGugGGGGCUGggGCc- -3'
miRNA:   3'- -GGCGGg--GGuuGUU--UCUCGACuuCGcc -5'
28782 5' -54.1 NC_006146.1 + 46271 0.72 0.774977
Target:  5'- gCGUCCCCGACGuuuuGAGCcccgGuGGCGGc -3'
miRNA:   3'- gGCGGGGGUUGUuu--CUCGa---CuUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 158924 0.65 0.975685
Target:  5'- uCUGCCCCUGGCAGaacugcagguaauAG-GCgu-AGCGGg -3'
miRNA:   3'- -GGCGGGGGUUGUU-------------UCuCGacuUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 73675 0.75 0.565173
Target:  5'- gUGuCCCCCAGCu-GGAGCUuGggGUGGu -3'
miRNA:   3'- gGC-GGGGGUUGuuUCUCGA-CuuCGCC- -5'
28782 5' -54.1 NC_006146.1 + 109176 0.77 0.493426
Target:  5'- cCCGgCCCUuagucugaggcccaGACAGAGGGCUGGacuGGCGGc -3'
miRNA:   3'- -GGCgGGGG--------------UUGUUUCUCGACU---UCGCC- -5'
28782 5' -54.1 NC_006146.1 + 95431 0.72 0.743602
Target:  5'- gCCGUCCCCGugAccacauaagccgagAAGGGCagGAAGgGGg -3'
miRNA:   3'- -GGCGGGGGUugU--------------UUCUCGa-CUUCgCC- -5'
28782 5' -54.1 NC_006146.1 + 45672 0.72 0.746503
Target:  5'- aCCGUCUCCGcCAGGGAGCgGAAG-GGc -3'
miRNA:   3'- -GGCGGGGGUuGUUUCUCGaCUUCgCC- -5'
28782 5' -54.1 NC_006146.1 + 68722 0.75 0.585356
Target:  5'- gCGUCCCCG----AGAGCUGucGCGGg -3'
miRNA:   3'- gGCGGGGGUuguuUCUCGACuuCGCC- -5'
28782 5' -54.1 NC_006146.1 + 159418 0.72 0.774045
Target:  5'- aCgGCCCCCGAgucCGGGuGGCUGAuggucgaGGCGGg -3'
miRNA:   3'- -GgCGGGGGUU---GUUUcUCGACU-------UCGCC- -5'
28782 5' -54.1 NC_006146.1 + 56229 0.71 0.783307
Target:  5'- -aGCCgUCCAGCGgguccgcGGGGGCgGAGGCGGg -3'
miRNA:   3'- ggCGG-GGGUUGU-------UUCUCGaCUUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 159352 0.75 0.615866
Target:  5'- gCCGCCUCCAGCAu--GGCgGggGCGu -3'
miRNA:   3'- -GGCGGGGGUUGUuucUCGaCuuCGCc -5'
28782 5' -54.1 NC_006146.1 + 109434 0.73 0.707185
Target:  5'- -gGCCCCCucaaaaagaGACAGguaguAGAGCUGGAGCu- -3'
miRNA:   3'- ggCGGGGG---------UUGUU-----UCUCGACUUCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.