miRNA display CGI


Results 1 - 20 of 321 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28782 5' -54.1 NC_006146.1 + 1 0.66 0.9644
Target:  5'- -C-CCCUUAACAGGGGGgaGggGgGGu -3'
miRNA:   3'- gGcGGGGGUUGUUUCUCgaCuuCgCC- -5'
28782 5' -54.1 NC_006146.1 + 265 0.67 0.955865
Target:  5'- gCGCCCaCCcguGAgGGGGAGCccgggaagacccgGggGCGGg -3'
miRNA:   3'- gGCGGG-GG---UUgUUUCUCGa------------CuuCGCC- -5'
28782 5' -54.1 NC_006146.1 + 571 0.67 0.953531
Target:  5'- -gGCCuCCCAGgaGAGGGGCcgGggGCGcGg -3'
miRNA:   3'- ggCGG-GGGUUg-UUUCUCGa-CuuCGC-C- -5'
28782 5' -54.1 NC_006146.1 + 859 0.66 0.960997
Target:  5'- gCCcUCCCCGACAuccAGGGaCUGGccGCGGg -3'
miRNA:   3'- -GGcGGGGGUUGUu--UCUC-GACUu-CGCC- -5'
28782 5' -54.1 NC_006146.1 + 1196 0.67 0.955865
Target:  5'- gCGCCCaCCcguGAgGGGGAGCccgggaagacccgGggGCGGg -3'
miRNA:   3'- gGCGGG-GG---UUgUUUCUCGa------------CuuCGCC- -5'
28782 5' -54.1 NC_006146.1 + 1502 0.67 0.953531
Target:  5'- -gGCCuCCCAGgaGAGGGGCcgGggGCGcGg -3'
miRNA:   3'- ggCGG-GGGUUg-UUUCUCGa-CuuCGC-C- -5'
28782 5' -54.1 NC_006146.1 + 1791 0.66 0.960997
Target:  5'- gCCcUCCCCGACAuccAGGGaCUGGccGCGGg -3'
miRNA:   3'- -GGcGGGGGUUGUu--UCUC-GACUu-CGCC- -5'
28782 5' -54.1 NC_006146.1 + 2128 0.67 0.955865
Target:  5'- gCGCCCaCCcguGAgGGGGAGCccgggaagacccgGggGCGGg -3'
miRNA:   3'- gGCGGG-GG---UUgUUUCUCGa------------CuuCGCC- -5'
28782 5' -54.1 NC_006146.1 + 2434 0.67 0.953531
Target:  5'- -gGCCuCCCAGgaGAGGGGCcgGggGCGcGg -3'
miRNA:   3'- ggCGG-GGGUUg-UUUCUCGa-CuuCGC-C- -5'
28782 5' -54.1 NC_006146.1 + 2723 0.66 0.960997
Target:  5'- gCCcUCCCCGACAuccAGGGaCUGGccGCGGg -3'
miRNA:   3'- -GGcGGGGGUUGUu--UCUC-GACUu-CGCC- -5'
28782 5' -54.1 NC_006146.1 + 3060 0.67 0.955865
Target:  5'- gCGCCCaCCcguGAgGGGGAGCccgggaagacccgGggGCGGg -3'
miRNA:   3'- gGCGGG-GG---UUgUUUCUCGa------------CuuCGCC- -5'
28782 5' -54.1 NC_006146.1 + 3366 0.67 0.953531
Target:  5'- -gGCCuCCCAGgaGAGGGGCcgGggGCGcGg -3'
miRNA:   3'- ggCGG-GGGUUg-UUUCUCGa-CuuCGC-C- -5'
28782 5' -54.1 NC_006146.1 + 3655 0.66 0.960997
Target:  5'- gCCcUCCCCGACAuccAGGGaCUGGccGCGGg -3'
miRNA:   3'- -GGcGGGGGUUGUu--UCUC-GACUu-CGCC- -5'
28782 5' -54.1 NC_006146.1 + 3821 0.68 0.920112
Target:  5'- aCGCCCCCcuCAcuuuuuuGGAGCc--GGCGGg -3'
miRNA:   3'- gGCGGGGGuuGUu------UCUCGacuUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 4664 0.69 0.889166
Target:  5'- gCCGUCCUgGGCcggguGGGC-GAGGCGGg -3'
miRNA:   3'- -GGCGGGGgUUGuuu--CUCGaCUUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 9674 0.71 0.819777
Target:  5'- aCUGCCCCCcACAuaugucAGCUuuGAAGUGGg -3'
miRNA:   3'- -GGCGGGGGuUGUuuc---UCGA--CUUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 11551 0.73 0.717132
Target:  5'- aCGCCCCCGcCAu---GCUGgAGGCGGc -3'
miRNA:   3'- gGCGGGGGUuGUuucuCGAC-UUCGCC- -5'
28782 5' -54.1 NC_006146.1 + 13621 0.66 0.960997
Target:  5'- gCCaCCCCCAcCcuGGGGCUGAcgaucaAGCGc -3'
miRNA:   3'- -GGcGGGGGUuGuuUCUCGACU------UCGCc -5'
28782 5' -54.1 NC_006146.1 + 13989 0.69 0.889166
Target:  5'- gCCGCCaCCCAggccucggccggGCu-GGuGCUGGaaGGCGGa -3'
miRNA:   3'- -GGCGG-GGGU------------UGuuUCuCGACU--UCGCC- -5'
28782 5' -54.1 NC_006146.1 + 14100 0.69 0.895819
Target:  5'- -aGUCCCCAggGCGGgaugucGGGGCUGcuGGCGGc -3'
miRNA:   3'- ggCGGGGGU--UGUU------UCUCGACu-UCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.