miRNA display CGI


Results 1 - 20 of 129 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28787 3' -55.4 NC_006146.1 + 120101 1.11 0.002742
Target:  5'- aCCACCUUUGACAUGGCCACGCCCGAGa -3'
miRNA:   3'- -GGUGGAAACUGUACCGGUGCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 115845 0.77 0.395555
Target:  5'- aCCACCgu---CAUGGCCAC-CCCGGGg -3'
miRNA:   3'- -GGUGGaaacuGUACCGGUGcGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 116864 0.77 0.421237
Target:  5'- aCCACCgccGACAUGGCCGCccuCCgGAGg -3'
miRNA:   3'- -GGUGGaaaCUGUACCGGUGc--GGgCUC- -5'
28787 3' -55.4 NC_006146.1 + 59182 0.75 0.494313
Target:  5'- gCCACCUUUGugGUGGCC-UGCuCCa-- -3'
miRNA:   3'- -GGUGGAAACugUACCGGuGCG-GGcuc -5'
28787 3' -55.4 NC_006146.1 + 18792 0.75 0.513488
Target:  5'- gCCACCUUaGACccGGCCAgGCCCc-- -3'
miRNA:   3'- -GGUGGAAaCUGuaCCGGUgCGGGcuc -5'
28787 3' -55.4 NC_006146.1 + 15714 0.75 0.513488
Target:  5'- gCCACCUUaGACccGGCCAgGCCCc-- -3'
miRNA:   3'- -GGUGGAAaCUGuaCCGGUgCGGGcuc -5'
28787 3' -55.4 NC_006146.1 + 72566 0.75 0.513488
Target:  5'- -gACCgg-GACG-GGCCGCGCCCGGc -3'
miRNA:   3'- ggUGGaaaCUGUaCCGGUGCGGGCUc -5'
28787 3' -55.4 NC_006146.1 + 102908 0.75 0.513488
Target:  5'- -gGCCgugUGGCGUGGCUGCGCCCc-- -3'
miRNA:   3'- ggUGGaa-ACUGUACCGGUGCGGGcuc -5'
28787 3' -55.4 NC_006146.1 + 21870 0.75 0.513488
Target:  5'- gCCACCUUaGACccGGCCAgGCCCc-- -3'
miRNA:   3'- -GGUGGAAaCUGuaCCGGUgCGGGcuc -5'
28787 3' -55.4 NC_006146.1 + 28025 0.75 0.513488
Target:  5'- gCCACCUUaGACccGGCCAgGCCCc-- -3'
miRNA:   3'- -GGUGGAAaCUGuaCCGGUgCGGGcuc -5'
28787 3' -55.4 NC_006146.1 + 12635 0.75 0.513488
Target:  5'- gCCACCUUaGACccGGCCAgGCCCc-- -3'
miRNA:   3'- -GGUGGAAaCUGuaCCGGUgCGGGcuc -5'
28787 3' -55.4 NC_006146.1 + 5627 0.75 0.532962
Target:  5'- aUCACCaggGACAUGGCCAUGgCgGGGg -3'
miRNA:   3'- -GGUGGaaaCUGUACCGGUGCgGgCUC- -5'
28787 3' -55.4 NC_006146.1 + 5149 0.74 0.556667
Target:  5'- cCCGCCcugcgaGACGcccugcugaaguuccUGGCCAgGCCCGAGa -3'
miRNA:   3'- -GGUGGaaa---CUGU---------------ACCGGUgCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 162363 0.74 0.566635
Target:  5'- gCGCCUUgGAgAUGGagccccuuggcgcgcCCGCGCCCGGGa -3'
miRNA:   3'- gGUGGAAaCUgUACC---------------GGUGCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 123249 0.74 0.592749
Target:  5'- gCCGCCgcgcugGGCcgGGCCGCGgCCaGAGa -3'
miRNA:   3'- -GGUGGaaa---CUGuaCCGGUGCgGG-CUC- -5'
28787 3' -55.4 NC_006146.1 + 102871 0.73 0.623108
Target:  5'- gCCACCUggu-CGUGGCCGgGCCCcAGu -3'
miRNA:   3'- -GGUGGAaacuGUACCGGUgCGGGcUC- -5'
28787 3' -55.4 NC_006146.1 + 138821 0.73 0.633251
Target:  5'- aUCACCUUUGcACAuuuggucagcUGaccgaugcucGCCACGCCCGGGu -3'
miRNA:   3'- -GGUGGAAAC-UGU----------AC----------CGGUGCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 34991 0.73 0.633251
Target:  5'- aUCACCUUUGcACAuuuggucagcUGaccgaugcucGCCACGCCCGGGu -3'
miRNA:   3'- -GGUGGAAAC-UGU----------AC----------CGGUGCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 30136 0.72 0.657576
Target:  5'- cCCAUgcaggggggugGGCAUGGCCACGCauCCGAGa -3'
miRNA:   3'- -GGUGgaaa-------CUGUACCGGUGCG--GGCUC- -5'
28787 3' -55.4 NC_006146.1 + 69462 0.72 0.659599
Target:  5'- gCCACCUgcacggcuuaaccagGaugcccuGCAUGGCCAgGCCCGAc -3'
miRNA:   3'- -GGUGGAaa-------------C-------UGUACCGGUgCGGGCUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.