miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28787 3' -55.4 NC_006146.1 + 3261 0.68 0.885927
Target:  5'- -gACCUgggGACGgcgcaGGCCACGagCCGGGg -3'
miRNA:   3'- ggUGGAaa-CUGUa----CCGGUGCg-GGCUC- -5'
28787 3' -55.4 NC_006146.1 + 3804 0.69 0.849128
Target:  5'- gCACgCgg-GGgAUGGCCACGCCCc-- -3'
miRNA:   3'- gGUG-GaaaCUgUACCGGUGCGGGcuc -5'
28787 3' -55.4 NC_006146.1 + 4339 0.67 0.924973
Target:  5'- gUCGCuCUUUgagcagcucuucagcGACGUGGCCACGgcCCCGcGGg -3'
miRNA:   3'- -GGUG-GAAA---------------CUGUACCGGUGC--GGGC-UC- -5'
28787 3' -55.4 NC_006146.1 + 5149 0.74 0.556667
Target:  5'- cCCGCCcugcgaGACGcccugcugaaguuccUGGCCAgGCCCGAGa -3'
miRNA:   3'- -GGUGGaaa---CUGU---------------ACCGGUgCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 5627 0.75 0.532962
Target:  5'- aUCACCaggGACAUGGCCAUGgCgGGGg -3'
miRNA:   3'- -GGUGGaaaCUGUACCGGUGCgGgCUC- -5'
28787 3' -55.4 NC_006146.1 + 10463 0.72 0.673735
Target:  5'- gCCGCCUUcgUGAUGggGGCCAcCGCCCa-- -3'
miRNA:   3'- -GGUGGAA--ACUGUa-CCGGU-GCGGGcuc -5'
28787 3' -55.4 NC_006146.1 + 10928 0.67 0.899138
Target:  5'- cCCGCgaaaUUUUGGCAUGGCCAacccaaaguuaGCCCa-- -3'
miRNA:   3'- -GGUG----GAAACUGUACCGGUg----------CGGGcuc -5'
28787 3' -55.4 NC_006146.1 + 12635 0.75 0.513488
Target:  5'- gCCACCUUaGACccGGCCAgGCCCc-- -3'
miRNA:   3'- -GGUGGAAaCUGuaCCGGUgCGGGcuc -5'
28787 3' -55.4 NC_006146.1 + 14196 0.66 0.927623
Target:  5'- gCCcCCUUugcccccUGGCA-GGCCA-GCCCGAc -3'
miRNA:   3'- -GGuGGAA-------ACUGUaCCGGUgCGGGCUc -5'
28787 3' -55.4 NC_006146.1 + 15696 0.67 0.899138
Target:  5'- aCACCUUcaucACggGGCCACuGgCCGAGg -3'
miRNA:   3'- gGUGGAAac--UGuaCCGGUG-CgGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 15714 0.75 0.513488
Target:  5'- gCCACCUUaGACccGGCCAgGCCCc-- -3'
miRNA:   3'- -GGUGGAAaCUGuaCCGGUgCGGGcuc -5'
28787 3' -55.4 NC_006146.1 + 15742 0.68 0.885927
Target:  5'- uCCGCCcagcaACGUGGcCCugGCCCGc- -3'
miRNA:   3'- -GGUGGaaac-UGUACC-GGugCGGGCuc -5'
28787 3' -55.4 NC_006146.1 + 17274 0.66 0.927623
Target:  5'- gCCcCCUUugcccccUGGCA-GGCCA-GCCCGAc -3'
miRNA:   3'- -GGuGGAA-------ACUGUaCCGGUgCGGGCUc -5'
28787 3' -55.4 NC_006146.1 + 17700 0.66 0.951314
Target:  5'- gCgGCCcgUGGC--GGCCaaGCGCCUGGGg -3'
miRNA:   3'- -GgUGGaaACUGuaCCGG--UGCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 18792 0.75 0.513488
Target:  5'- gCCACCUUaGACccGGCCAgGCCCc-- -3'
miRNA:   3'- -GGUGGAAaCUGuaCCGGUgCGGGcuc -5'
28787 3' -55.4 NC_006146.1 + 19888 0.66 0.947143
Target:  5'- gCCAaCUUUGAC-UGGCCcuACGUCCuGGa -3'
miRNA:   3'- -GGUgGAAACUGuACCGG--UGCGGGcUC- -5'
28787 3' -55.4 NC_006146.1 + 20352 0.66 0.927623
Target:  5'- gCCcCCUUugcccccUGGCA-GGCCA-GCCCGAc -3'
miRNA:   3'- -GGuGGAA-------ACUGUaCCGGUgCGGGCUc -5'
28787 3' -55.4 NC_006146.1 + 21870 0.75 0.513488
Target:  5'- gCCACCUUaGACccGGCCAgGCCCc-- -3'
miRNA:   3'- -GGUGGAAaCUGuaCCGGUgCGGGcuc -5'
28787 3' -55.4 NC_006146.1 + 23430 0.66 0.927623
Target:  5'- gCCcCCUUugcccccUGGCA-GGCCA-GCCCGAc -3'
miRNA:   3'- -GGuGGAA-------ACUGUaCCGGUgCGGGCUc -5'
28787 3' -55.4 NC_006146.1 + 24948 0.66 0.933245
Target:  5'- gCC-CCUUaGACccGGCCAgGCCCc-- -3'
miRNA:   3'- -GGuGGAAaCUGuaCCGGUgCGGGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.