miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28787 3' -55.4 NC_006146.1 + 115845 0.77 0.395555
Target:  5'- aCCACCgu---CAUGGCCAC-CCCGGGg -3'
miRNA:   3'- -GGUGGaaacuGUACCGGUGcGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 169034 0.72 0.663643
Target:  5'- -gGCCUUcggGACGggaGGCCggcgcGCGCCCGGGg -3'
miRNA:   3'- ggUGGAAa--CUGUa--CCGG-----UGCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 140749 0.72 0.673735
Target:  5'- gCCGCuCUcgGauGCGUGGCCAUGCCCa-- -3'
miRNA:   3'- -GGUG-GAaaC--UGUACCGGUGCGGGcuc -5'
28787 3' -55.4 NC_006146.1 + 70144 0.66 0.951314
Target:  5'- gCCGCCUUcgccUGGCuccUGGCCgggGCGCUgguggccggCGAGg -3'
miRNA:   3'- -GGUGGAA----ACUGu--ACCGG---UGCGG---------GCUC- -5'
28787 3' -55.4 NC_006146.1 + 18792 0.75 0.513488
Target:  5'- gCCACCUUaGACccGGCCAgGCCCc-- -3'
miRNA:   3'- -GGUGGAAaCUGuaCCGGUgCGGGcuc -5'
28787 3' -55.4 NC_006146.1 + 21870 0.75 0.513488
Target:  5'- gCCACCUUaGACccGGCCAgGCCCc-- -3'
miRNA:   3'- -GGUGGAAaCUGuaCCGGUgCGGGcuc -5'
28787 3' -55.4 NC_006146.1 + 5149 0.74 0.556667
Target:  5'- cCCGCCcugcgaGACGcccugcugaaguuccUGGCCAgGCCCGAGa -3'
miRNA:   3'- -GGUGGaaa---CUGU---------------ACCGGUgCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 162363 0.74 0.566635
Target:  5'- gCGCCUUgGAgAUGGagccccuuggcgcgcCCGCGCCCGGGa -3'
miRNA:   3'- gGUGGAAaCUgUACC---------------GGUGCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 138821 0.73 0.633251
Target:  5'- aUCACCUUUGcACAuuuggucagcUGaccgaugcucGCCACGCCCGGGu -3'
miRNA:   3'- -GGUGGAAAC-UGU----------AC----------CGGUGCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 168102 0.72 0.663643
Target:  5'- -gGCCUUcggGACGggaGGCCggcgcGCGCCCGGGg -3'
miRNA:   3'- ggUGGAAa--CUGUa--CCGG-----UGCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 50795 0.72 0.663643
Target:  5'- uCCAUCUcgGGCGUGGCCAUGUCaaAGg -3'
miRNA:   3'- -GGUGGAaaCUGUACCGGUGCGGgcUC- -5'
28787 3' -55.4 NC_006146.1 + 34991 0.73 0.633251
Target:  5'- aUCACCUUUGcACAuuuggucagcUGaccgaugcucGCCACGCCCGGGu -3'
miRNA:   3'- -GGUGGAAAC-UGU----------AC----------CGGUGCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 59182 0.75 0.494313
Target:  5'- gCCACCUUUGugGUGGCC-UGCuCCa-- -3'
miRNA:   3'- -GGUGGAAACugUACCGGuGCG-GGcuc -5'
28787 3' -55.4 NC_006146.1 + 95907 0.72 0.663643
Target:  5'- uCCACCUUUGAguCGUGGuCCACGaCCaUGAa -3'
miRNA:   3'- -GGUGGAAACU--GUACC-GGUGC-GG-GCUc -5'
28787 3' -55.4 NC_006146.1 + 12635 0.75 0.513488
Target:  5'- gCCACCUUaGACccGGCCAgGCCCc-- -3'
miRNA:   3'- -GGUGGAAaCUGuaCCGGUgCGGGcuc -5'
28787 3' -55.4 NC_006146.1 + 102871 0.73 0.623108
Target:  5'- gCCACCUggu-CGUGGCCGgGCCCcAGu -3'
miRNA:   3'- -GGUGGAaacuGUACCGGUgCGGGcUC- -5'
28787 3' -55.4 NC_006146.1 + 167170 0.72 0.663643
Target:  5'- -gGCCUUcggGACGggaGGCCggcgcGCGCCCGGGg -3'
miRNA:   3'- ggUGGAAa--CUGUa--CCGG-----UGCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 169966 0.72 0.663643
Target:  5'- -gGCCUUcggGACGggaGGCCggcgcGCGCCCGGGg -3'
miRNA:   3'- ggUGGAAa--CUGUa--CCGG-----UGCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 15714 0.75 0.513488
Target:  5'- gCCACCUUaGACccGGCCAgGCCCc-- -3'
miRNA:   3'- -GGUGGAAaCUGuaCCGGUgCGGGcuc -5'
28787 3' -55.4 NC_006146.1 + 28025 0.75 0.513488
Target:  5'- gCCACCUUaGACccGGCCAgGCCCc-- -3'
miRNA:   3'- -GGUGGAAaCUGuaCCGGUgCGGGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.