miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28787 3' -55.4 NC_006146.1 + 25387 0.66 0.933245
Target:  5'- uCCGCCgc-GGCAagGGCUACGUCaGAGu -3'
miRNA:   3'- -GGUGGaaaCUGUa-CCGGUGCGGgCUC- -5'
28787 3' -55.4 NC_006146.1 + 35091 0.66 0.933245
Target:  5'- gCUGCCUUUGGCAUGaaucacuuugaGCCACuaaGCCCc-- -3'
miRNA:   3'- -GGUGGAAACUGUAC-----------CGGUG---CGGGcuc -5'
28787 3' -55.4 NC_006146.1 + 158118 0.66 0.933245
Target:  5'- uCCGCCccUG-CAgGGCCGCGUCCa-- -3'
miRNA:   3'- -GGUGGaaACuGUaCCGGUGCGGGcuc -5'
28787 3' -55.4 NC_006146.1 + 62840 0.66 0.928146
Target:  5'- -gGCCgc---CGUGGCCAgGCCgGAGg -3'
miRNA:   3'- ggUGGaaacuGUACCGGUgCGGgCUC- -5'
28787 3' -55.4 NC_006146.1 + 26508 0.66 0.927623
Target:  5'- gCCcCCUUugcccccUGGCA-GGCCA-GCCCGAc -3'
miRNA:   3'- -GGuGGAA-------ACUGUaCCGGUgCGGGCUc -5'
28787 3' -55.4 NC_006146.1 + 14196 0.66 0.927623
Target:  5'- gCCcCCUUugcccccUGGCA-GGCCA-GCCCGAc -3'
miRNA:   3'- -GGuGGAA-------ACUGUaCCGGUgCGGGCUc -5'
28787 3' -55.4 NC_006146.1 + 17274 0.66 0.927623
Target:  5'- gCCcCCUUugcccccUGGCA-GGCCA-GCCCGAc -3'
miRNA:   3'- -GGuGGAA-------ACUGUaCCGGUgCGGGCUc -5'
28787 3' -55.4 NC_006146.1 + 29586 0.66 0.927623
Target:  5'- gCCcCCUUugcccccUGGCA-GGCCA-GCCCGAc -3'
miRNA:   3'- -GGuGGAA-------ACUGUaCCGGUgCGGGCUc -5'
28787 3' -55.4 NC_006146.1 + 23430 0.66 0.927623
Target:  5'- gCCcCCUUugcccccUGGCA-GGCCA-GCCCGAc -3'
miRNA:   3'- -GGuGGAA-------ACUGUaCCGGUgCGGGCUc -5'
28787 3' -55.4 NC_006146.1 + 20352 0.66 0.927623
Target:  5'- gCCcCCUUugcccccUGGCA-GGCCA-GCCCGAc -3'
miRNA:   3'- -GGuGGAA-------ACUGUaCCGGUgCGGGCUc -5'
28787 3' -55.4 NC_006146.1 + 4339 0.67 0.924973
Target:  5'- gUCGCuCUUUgagcagcucuucagcGACGUGGCCACGgcCCCGcGGg -3'
miRNA:   3'- -GGUG-GAAA---------------CUGUACCGGUGC--GGGC-UC- -5'
28787 3' -55.4 NC_006146.1 + 67203 0.67 0.922811
Target:  5'- uCCACUg--GcCGUGGCCGguCGCCUGGc -3'
miRNA:   3'- -GGUGGaaaCuGUACCGGU--GCGGGCUc -5'
28787 3' -55.4 NC_006146.1 + 56570 0.67 0.922811
Target:  5'- uCCACCUccGuCAggggcGGCCGgGCgCCGAGc -3'
miRNA:   3'- -GGUGGAaaCuGUa----CCGGUgCG-GGCUC- -5'
28787 3' -55.4 NC_006146.1 + 116232 0.67 0.918937
Target:  5'- gCCACCgucugggaggucuacGACggGGCCccuccaAUGCCCGGGg -3'
miRNA:   3'- -GGUGGaaa------------CUGuaCCGG------UGCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 52929 0.67 0.911439
Target:  5'- gCACCUUUGAgaauuuCAUGGCgAggaucguggacuCGCCgGAGa -3'
miRNA:   3'- gGUGGAAACU------GUACCGgU------------GCGGgCUC- -5'
28787 3' -55.4 NC_006146.1 + 158270 0.67 0.911439
Target:  5'- -gGCC--UGGCcgggucuaagGUGGCCugGCCUGGGc -3'
miRNA:   3'- ggUGGaaACUG----------UACCGGugCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 152113 0.67 0.911439
Target:  5'- -gGCC--UGGCcgggucuaagGUGGCCugGCCUGGGc -3'
miRNA:   3'- ggUGGaaACUG----------UACCGGugCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 145957 0.67 0.911439
Target:  5'- -gGCC--UGGCcgggucuaagGUGGCCugGCCUGGGc -3'
miRNA:   3'- ggUGGaaACUG----------UACCGGugCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 149035 0.67 0.911439
Target:  5'- -gGCC--UGGCcgggucuaagGUGGCCugGCCUGGGc -3'
miRNA:   3'- ggUGGaaACUG----------UACCGGugCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 142879 0.67 0.911439
Target:  5'- -gGCC--UGGCcgggucuaagGUGGCCugGCCUGGGc -3'
miRNA:   3'- ggUGGaaACUG----------UACCGGugCGGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.