miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28787 3' -55.4 NC_006146.1 + 33391 0.67 0.911439
Target:  5'- cCCGCUccggguggGGgGUGGCC-CGCCUGGGc -3'
miRNA:   3'- -GGUGGaaa-----CUgUACCGGuGCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 155191 0.67 0.911439
Target:  5'- -gGCC--UGGCcgggucuaagGUGGCCugGCCUGGGc -3'
miRNA:   3'- ggUGGaaACUG----------UACCGGugCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 119047 0.67 0.905403
Target:  5'- cCCAUCcccgGGCucgGGCCAgGCcCCGAGc -3'
miRNA:   3'- -GGUGGaaa-CUGua-CCGGUgCG-GGCUC- -5'
28787 3' -55.4 NC_006146.1 + 114108 0.67 0.905403
Target:  5'- cCCGCCa--GACGgccGCCGCGCucaCCGAGg -3'
miRNA:   3'- -GGUGGaaaCUGUac-CGGUGCG---GGCUC- -5'
28787 3' -55.4 NC_006146.1 + 130224 0.67 0.905403
Target:  5'- gCACCUcaggGugGUGGCCAgGCCg--- -3'
miRNA:   3'- gGUGGAaa--CugUACCGGUgCGGgcuc -5'
28787 3' -55.4 NC_006146.1 + 10928 0.67 0.899138
Target:  5'- cCCGCgaaaUUUUGGCAUGGCCAacccaaaguuaGCCCa-- -3'
miRNA:   3'- -GGUG----GAAACUGUACCGGUg----------CGGGcuc -5'
28787 3' -55.4 NC_006146.1 + 53525 0.67 0.899138
Target:  5'- gCCGCgcgUGugAaGGCCGCGaggaCCGAGg -3'
miRNA:   3'- -GGUGgaaACugUaCCGGUGCg---GGCUC- -5'
28787 3' -55.4 NC_006146.1 + 106403 0.67 0.899138
Target:  5'- aCGCCUcgcaGCGUGGCCGguUGgCCGAGa -3'
miRNA:   3'- gGUGGAaac-UGUACCGGU--GCgGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 15696 0.67 0.899138
Target:  5'- aCACCUUcaucACggGGCCACuGgCCGAGg -3'
miRNA:   3'- gGUGGAAac--UGuaCCGGUG-CgGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 161022 0.68 0.892644
Target:  5'- aCCGCCUUUGugGgugagcgGGCCgu-CCUGAGu -3'
miRNA:   3'- -GGUGGAAACugUa------CCGGugcGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 107467 0.68 0.892644
Target:  5'- uUCAgCUUgugGcGCAUGGCCGCG-CUGAGg -3'
miRNA:   3'- -GGUgGAAa--C-UGUACCGGUGCgGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 80827 0.68 0.892644
Target:  5'- cCUGCCUUggaGACAcGGCCAUgGCCCa-- -3'
miRNA:   3'- -GGUGGAAa--CUGUaCCGGUG-CGGGcuc -5'
28787 3' -55.4 NC_006146.1 + 48195 0.68 0.891983
Target:  5'- gUCGCCgacUUGGCAUccggggacuggagGGCCuggcGCGCCUGGGu -3'
miRNA:   3'- -GGUGGa--AACUGUA-------------CCGG----UGCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 47221 0.68 0.88864
Target:  5'- gCCGCCUccgccacgaucUUgagcuggcgcgggucGACGUGGCccCugGCCCGGGu -3'
miRNA:   3'- -GGUGGA-----------AA---------------CUGUACCG--GugCGGGCUC- -5'
28787 3' -55.4 NC_006146.1 + 3261 0.68 0.885927
Target:  5'- -gACCUgggGACGgcgcaGGCCACGagCCGGGg -3'
miRNA:   3'- ggUGGAaa-CUGUa----CCGGUGCg-GGCUC- -5'
28787 3' -55.4 NC_006146.1 + 65224 0.68 0.885927
Target:  5'- uCCucCCUUUGACGUGaGCC--GCCUGAa -3'
miRNA:   3'- -GGu-GGAAACUGUAC-CGGugCGGGCUc -5'
28787 3' -55.4 NC_006146.1 + 15742 0.68 0.885927
Target:  5'- uCCGCCcagcaACGUGGcCCugGCCCGc- -3'
miRNA:   3'- -GGUGGaaac-UGUACC-GGugCGGGCuc -5'
28787 3' -55.4 NC_006146.1 + 70894 0.68 0.878988
Target:  5'- gCCGCCUcccGACGUGcCCGCuCCCGAu -3'
miRNA:   3'- -GGUGGAaa-CUGUACcGGUGcGGGCUc -5'
28787 3' -55.4 NC_006146.1 + 101030 0.68 0.878988
Target:  5'- aCgGCCgugGACcugGGCCucuACGCCCGAc -3'
miRNA:   3'- -GgUGGaaaCUGua-CCGG---UGCGGGCUc -5'
28787 3' -55.4 NC_006146.1 + 124984 0.68 0.878988
Target:  5'- uCCACCUacGGCAcGGUCAcCGgCCGGGc -3'
miRNA:   3'- -GGUGGAaaCUGUaCCGGU-GCgGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.