miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28789 3' -60 NC_006146.1 + 119591 1.04 0.002322
Target:  5'- cAACUCCUCAGCCCCCUCAAGCGGCUAc -3'
miRNA:   3'- -UUGAGGAGUCGGGGGAGUUCGCCGAU- -5'
28789 3' -60 NC_006146.1 + 119651 1.04 0.002322
Target:  5'- cAACUCCUCAGCCCCCUCAAGCGGCUAc -3'
miRNA:   3'- -UUGAGGAGUCGGGGGAGUUCGCCGAU- -5'
28789 3' -60 NC_006146.1 + 119561 1.04 0.002322
Target:  5'- cAACUCCUCAGCCCCCUCAAGCGGCUAc -3'
miRNA:   3'- -UUGAGGAGUCGGGGGAGUUCGCCGAU- -5'
28789 3' -60 NC_006146.1 + 119621 1.04 0.002322
Target:  5'- cAACUCCUCAGCCCCCUCAAGCGGCUAc -3'
miRNA:   3'- -UUGAGGAGUCGGGGGAGUUCGCCGAU- -5'
28789 3' -60 NC_006146.1 + 119531 1.04 0.002322
Target:  5'- cAACUCCUCAGCCCCCUCAAGCGGCUAc -3'
miRNA:   3'- -UUGAGGAGUCGGGGGAGUUCGCCGAU- -5'
28789 3' -60 NC_006146.1 + 119501 1.04 0.002322
Target:  5'- cAACUCCUCAGCCCCCUCAAGCGGCUAc -3'
miRNA:   3'- -UUGAGGAGUCGGGGGAGUUCGCCGAU- -5'
28789 3' -60 NC_006146.1 + 119681 0.77 0.171498
Target:  5'- cAACUCCUCAGCCCCCcCAAGCa---- -3'
miRNA:   3'- -UUGAGGAGUCGGGGGaGUUCGccgau -5'
28789 3' -60 NC_006146.1 + 3446 0.75 0.241948
Target:  5'- gGGCUCCaCGGUCCCgCUCGGGgGGCUAa -3'
miRNA:   3'- -UUGAGGaGUCGGGG-GAGUUCgCCGAU- -5'
28789 3' -60 NC_006146.1 + 114567 0.71 0.407261
Target:  5'- uGCUCCgggCGGCCuCCUUCucGCGGCg- -3'
miRNA:   3'- uUGAGGa--GUCGG-GGGAGuuCGCCGau -5'
28789 3' -60 NC_006146.1 + 22076 0.71 0.415883
Target:  5'- -uUUCCUCAGCUgCCUCAGacagccGCGGCg- -3'
miRNA:   3'- uuGAGGAGUCGGgGGAGUU------CGCCGau -5'
28789 3' -60 NC_006146.1 + 119770 0.7 0.460609
Target:  5'- cGACUCCUCAGCCUCCaCcAGUGGa-- -3'
miRNA:   3'- -UUGAGGAGUCGGGGGaGuUCGCCgau -5'
28789 3' -60 NC_006146.1 + 119712 0.7 0.488634
Target:  5'- uGCUCCaCAGCUUCCUCGAGCaGCc- -3'
miRNA:   3'- uUGAGGaGUCGGGGGAGUUCGcCGau -5'
28789 3' -60 NC_006146.1 + 156042 0.7 0.488634
Target:  5'- cAGCUCCcuggCuGCCCCCUCGGccucccGCGGCc- -3'
miRNA:   3'- -UUGAGGa---GuCGGGGGAGUU------CGCCGau -5'
28789 3' -60 NC_006146.1 + 125666 0.7 0.488634
Target:  5'- cACUCCcacUCAGCCgCUUCAgcugGGCGGCg- -3'
miRNA:   3'- uUGAGG---AGUCGGgGGAGU----UCGCCGau -5'
28789 3' -60 NC_006146.1 + 119324 0.7 0.451458
Target:  5'- uGGCUCCccCGGgCCCCUCccGGCGGCg- -3'
miRNA:   3'- -UUGAGGa-GUCgGGGGAGu-UCGCCGau -5'
28789 3' -60 NC_006146.1 + 73543 0.69 0.517434
Target:  5'- aGGCUCCggAGCUCCC-CGGGCGGgUGg -3'
miRNA:   3'- -UUGAGGagUCGGGGGaGUUCGCCgAU- -5'
28789 3' -60 NC_006146.1 + 156498 0.69 0.507755
Target:  5'- uGCUCCUguGCCCgCCUC--GgGGCUGc -3'
miRNA:   3'- uUGAGGAguCGGG-GGAGuuCgCCGAU- -5'
28789 3' -60 NC_006146.1 + 15103 0.69 0.546888
Target:  5'- uGACUCggUGGCCCCCagggccacCGAGCGGCUc -3'
miRNA:   3'- -UUGAGgaGUCGGGGGa-------GUUCGCCGAu -5'
28789 3' -60 NC_006146.1 + 147264 0.69 0.507755
Target:  5'- uGCUCCUguGCCCgCCUC--GgGGCUGc -3'
miRNA:   3'- uUGAGGAguCGGG-GGAGuuCgCCGAU- -5'
28789 3' -60 NC_006146.1 + 144186 0.69 0.507755
Target:  5'- uGCUCCUguGCCCgCCUC--GgGGCUGc -3'
miRNA:   3'- uUGAGGAguCGGG-GGAGuuCgCCGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.