Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28789 | 3' | -60 | NC_006146.1 | + | 728 | 0.67 | 0.627479 |
Target: 5'- cGC-CCUCgggAGCCCCCUCAgcccccGGcCGGCg- -3' miRNA: 3'- uUGaGGAG---UCGGGGGAGU------UC-GCCGau -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 1659 | 0.67 | 0.627479 |
Target: 5'- cGC-CCUCgggAGCCCCCUCAgcccccGGcCGGCg- -3' miRNA: 3'- uUGaGGAG---UCGGGGGAGU------UC-GCCGau -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 2591 | 0.67 | 0.627479 |
Target: 5'- cGC-CCUCgggAGCCCCCUCAgcccccGGcCGGCg- -3' miRNA: 3'- uUGaGGAG---UCGGGGGAGU------UC-GCCGau -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 3446 | 0.75 | 0.241948 |
Target: 5'- gGGCUCCaCGGUCCCgCUCGGGgGGCUAa -3' miRNA: 3'- -UUGAGGaGUCGGGG-GAGUUCgCCGAU- -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 3523 | 0.67 | 0.627479 |
Target: 5'- cGC-CCUCgggAGCCCCCUCAgcccccGGcCGGCg- -3' miRNA: 3'- uUGaGGAG---UCGGGGGAGU------UC-GCCGau -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 13055 | 0.68 | 0.607167 |
Target: 5'- aGACUCCg-GGCCCCa--AGGCGGCc- -3' miRNA: 3'- -UUGAGGagUCGGGGgagUUCGCCGau -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 13200 | 0.66 | 0.71812 |
Target: 5'- cGCUCCgggcGCCUCCUCGGGUucagccgcuGGCUGg -3' miRNA: 3'- uUGAGGagu-CGGGGGAGUUCG---------CCGAU- -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 15103 | 0.69 | 0.546888 |
Target: 5'- uGACUCggUGGCCCCCagggccacCGAGCGGCUc -3' miRNA: 3'- -UUGAGgaGUCGGGGGa-------GUUCGCCGAu -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 16133 | 0.68 | 0.607167 |
Target: 5'- aGACUCCg-GGCCCCa--AGGCGGCc- -3' miRNA: 3'- -UUGAGGagUCGGGGgagUUCGCCGau -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 16278 | 0.66 | 0.71812 |
Target: 5'- cGCUCCgggcGCCUCCUCGGGUucagccgcuGGCUGg -3' miRNA: 3'- uUGAGGagu-CGGGGGAGUUCG---------CCGAU- -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 19211 | 0.68 | 0.607167 |
Target: 5'- aGACUCCg-GGCCCCa--AGGCGGCc- -3' miRNA: 3'- -UUGAGGagUCGGGGgagUUCGCCGau -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 19356 | 0.66 | 0.71812 |
Target: 5'- cGCUCCgggcGCCUCCUCGGGUucagccgcuGGCUGg -3' miRNA: 3'- uUGAGGagu-CGGGGGAGUUCG---------CCGAU- -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 22076 | 0.71 | 0.415883 |
Target: 5'- -uUUCCUCAGCUgCCUCAGacagccGCGGCg- -3' miRNA: 3'- uuGAGGAGUCGGgGGAGUU------CGCCGau -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 22289 | 0.68 | 0.607167 |
Target: 5'- aGACUCCg-GGCCCCa--AGGCGGCc- -3' miRNA: 3'- -UUGAGGagUCGGGGgagUUCGCCGau -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 22434 | 0.66 | 0.71812 |
Target: 5'- cGCUCCgggcGCCUCCUCGGGUucagccgcuGGCUGg -3' miRNA: 3'- uUGAGGagu-CGGGGGAGUUCG---------CCGAU- -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 25367 | 0.68 | 0.607167 |
Target: 5'- aGACUCCg-GGCCCCa--AGGCGGCc- -3' miRNA: 3'- -UUGAGGagUCGGGGgagUUCGCCGau -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 25512 | 0.66 | 0.71812 |
Target: 5'- cGCUCCgggcGCCUCCUCGGGUucagccgcuGGCUGg -3' miRNA: 3'- uUGAGGagu-CGGGGGAGUUCG---------CCGAU- -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 28445 | 0.68 | 0.607167 |
Target: 5'- aGACUCCg-GGCCCCa--AGGCGGCc- -3' miRNA: 3'- -UUGAGGagUCGGGGgagUUCGCCGau -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 28590 | 0.66 | 0.71812 |
Target: 5'- cGCUCCgggcGCCUCCUCGGGUucagccgcuGGCUGg -3' miRNA: 3'- uUGAGGagu-CGGGGGAGUUCG---------CCGAU- -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 42028 | 0.68 | 0.607167 |
Target: 5'- gGGCccgCCUCcGCCCCCUCuucGUGGCc- -3' miRNA: 3'- -UUGa--GGAGuCGGGGGAGuu-CGCCGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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