miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28789 3' -60 NC_006146.1 + 163000 0.68 0.576853
Target:  5'- -uCUCCUCGGCCUCCUCuuuG-GGCc- -3'
miRNA:   3'- uuGAGGAGUCGGGGGAGuu-CgCCGau -5'
28789 3' -60 NC_006146.1 + 160648 0.66 0.708222
Target:  5'- -uCUCCUguGCUUCCUCAGGgaGGCc- -3'
miRNA:   3'- uuGAGGAguCGGGGGAGUUCg-CCGau -5'
28789 3' -60 NC_006146.1 + 157534 0.66 0.69826
Target:  5'- gGGC-CCUgGGCCCCga-GGGCGGCUc -3'
miRNA:   3'- -UUGaGGAgUCGGGGgagUUCGCCGAu -5'
28789 3' -60 NC_006146.1 + 156498 0.69 0.507755
Target:  5'- uGCUCCUguGCCCgCCUC--GgGGCUGc -3'
miRNA:   3'- uUGAGGAguCGGG-GGAGuuCgCCGAU- -5'
28789 3' -60 NC_006146.1 + 156042 0.7 0.488634
Target:  5'- cAGCUCCcuggCuGCCCCCUCGGccucccGCGGCc- -3'
miRNA:   3'- -UUGAGGa---GuCGGGGGAGUU------CGCCGau -5'
28789 3' -60 NC_006146.1 + 154456 0.66 0.69826
Target:  5'- gGGC-CCUgGGCCCCga-GGGCGGCUc -3'
miRNA:   3'- -UUGaGGAgUCGGGGgagUUCGCCGAu -5'
28789 3' -60 NC_006146.1 + 153420 0.69 0.507755
Target:  5'- uGCUCCUguGCCCgCCUC--GgGGCUGc -3'
miRNA:   3'- uUGAGGAguCGGG-GGAGuuCgCCGAU- -5'
28789 3' -60 NC_006146.1 + 152184 0.67 0.627479
Target:  5'- aAACUCaguCUCuGCCUCCUCGAGCaGCc- -3'
miRNA:   3'- -UUGAG---GAGuCGGGGGAGUUCGcCGau -5'
28789 3' -60 NC_006146.1 + 151378 0.66 0.69826
Target:  5'- gGGC-CCUgGGCCCCga-GGGCGGCUc -3'
miRNA:   3'- -UUGaGGAgUCGGGGgagUUCGCCGAu -5'
28789 3' -60 NC_006146.1 + 150342 0.69 0.507755
Target:  5'- uGCUCCUguGCCCgCCUC--GgGGCUGc -3'
miRNA:   3'- uUGAGGAguCGGG-GGAGuuCgCCGAU- -5'
28789 3' -60 NC_006146.1 + 148300 0.66 0.69826
Target:  5'- gGGC-CCUgGGCCCCga-GGGCGGCUc -3'
miRNA:   3'- -UUGaGGAgUCGGGGgagUUCGCCGAu -5'
28789 3' -60 NC_006146.1 + 147264 0.69 0.507755
Target:  5'- uGCUCCUguGCCCgCCUC--GgGGCUGc -3'
miRNA:   3'- uUGAGGAguCGGG-GGAGuuCgCCGAU- -5'
28789 3' -60 NC_006146.1 + 146917 0.67 0.627479
Target:  5'- cGCgUCCUCuuucGCCCCCUCuc-CGGCUc -3'
miRNA:   3'- uUG-AGGAGu---CGGGGGAGuucGCCGAu -5'
28789 3' -60 NC_006146.1 + 145222 0.66 0.69826
Target:  5'- gGGC-CCUgGGCCCCga-GGGCGGCUc -3'
miRNA:   3'- -UUGaGGAgUCGGGGgagUUCGCCGAu -5'
28789 3' -60 NC_006146.1 + 144186 0.69 0.507755
Target:  5'- uGCUCCUguGCCCgCCUC--GgGGCUGc -3'
miRNA:   3'- uUGAGGAguCGGG-GGAGuuCgCCGAU- -5'
28789 3' -60 NC_006146.1 + 143010 0.66 0.69826
Target:  5'- cAGCUCC-CGGUCCCCUCcgcuuGCGuGCc- -3'
miRNA:   3'- -UUGAGGaGUCGGGGGAGuu---CGC-CGau -5'
28789 3' -60 NC_006146.1 + 142144 0.66 0.69826
Target:  5'- gGGC-CCUgGGCCCCga-GGGCGGCUc -3'
miRNA:   3'- -UUGaGGAgUCGGGGgagUUCGCCGAu -5'
28789 3' -60 NC_006146.1 + 142121 0.68 0.607167
Target:  5'- gAGC-CCUCGGCCCCaggguaugCUCccAGUGGCUGu -3'
miRNA:   3'- -UUGaGGAGUCGGGG--------GAGu-UCGCCGAU- -5'
28789 3' -60 NC_006146.1 + 141555 0.66 0.708222
Target:  5'- cACcCCUCAGCCCCCUCuguuccuUGGUg- -3'
miRNA:   3'- uUGaGGAGUCGGGGGAGuuc----GCCGau -5'
28789 3' -60 NC_006146.1 + 125666 0.7 0.488634
Target:  5'- cACUCCcacUCAGCCgCUUCAgcugGGCGGCg- -3'
miRNA:   3'- uUGAGG---AGUCGGgGGAGU----UCGCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.