miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28789 3' -60 NC_006146.1 + 113898 0.67 0.614271
Target:  5'- -cCUCCUCggccauGGCCCCCUucuaucuuaaccagCAGGUGGCc- -3'
miRNA:   3'- uuGAGGAG------UCGGGGGA--------------GUUCGCCGau -5'
28789 3' -60 NC_006146.1 + 3446 0.75 0.241948
Target:  5'- gGGCUCCaCGGUCCCgCUCGGGgGGCUAa -3'
miRNA:   3'- -UUGAGGaGUCGGGG-GAGUUCgCCGAU- -5'
28789 3' -60 NC_006146.1 + 119324 0.7 0.451458
Target:  5'- uGGCUCCccCGGgCCCCUCccGGCGGCg- -3'
miRNA:   3'- -UUGAGGa-GUCgGGGGAGu-UCGCCGau -5'
28789 3' -60 NC_006146.1 + 19211 0.68 0.607167
Target:  5'- aGACUCCg-GGCCCCa--AGGCGGCc- -3'
miRNA:   3'- -UUGAGGagUCGGGGgagUUCGCCGau -5'
28789 3' -60 NC_006146.1 + 22289 0.68 0.607167
Target:  5'- aGACUCCg-GGCCCCa--AGGCGGCc- -3'
miRNA:   3'- -UUGAGGagUCGGGGgagUUCGCCGau -5'
28789 3' -60 NC_006146.1 + 125666 0.7 0.488634
Target:  5'- cACUCCcacUCAGCCgCUUCAgcugGGCGGCg- -3'
miRNA:   3'- uUGAGG---AGUCGGgGGAGU----UCGCCGau -5'
28789 3' -60 NC_006146.1 + 56822 0.68 0.597034
Target:  5'- gGGCUUCU-GGCCCCCg-AGGCGGCc- -3'
miRNA:   3'- -UUGAGGAgUCGGGGGagUUCGCCGau -5'
28789 3' -60 NC_006146.1 + 16133 0.68 0.607167
Target:  5'- aGACUCCg-GGCCCCa--AGGCGGCc- -3'
miRNA:   3'- -UUGAGGagUCGGGGgagUUCGCCGau -5'
28789 3' -60 NC_006146.1 + 142121 0.68 0.607167
Target:  5'- gAGC-CCUCGGCCCCaggguaugCUCccAGUGGCUGu -3'
miRNA:   3'- -UUGaGGAGUCGGGG--------GAGu-UCGCCGAU- -5'
28789 3' -60 NC_006146.1 + 146917 0.67 0.627479
Target:  5'- cGCgUCCUCuuucGCCCCCUCuc-CGGCUc -3'
miRNA:   3'- uUG-AGGAGu---CGGGGGAGuucGCCGAu -5'
28789 3' -60 NC_006146.1 + 84278 0.66 0.71812
Target:  5'- uGugUCCUgccCAGCugCCCCUCAAGCccaGCUGc -3'
miRNA:   3'- -UugAGGA---GUCG--GGGGAGUUCGc--CGAU- -5'
28789 3' -60 NC_006146.1 + 53006 0.69 0.507755
Target:  5'- -cCUCUUCuGGCCCugggCCUCAcGCGGCUGg -3'
miRNA:   3'- uuGAGGAG-UCGGG----GGAGUuCGCCGAU- -5'
28789 3' -60 NC_006146.1 + 156042 0.7 0.488634
Target:  5'- cAGCUCCcuggCuGCCCCCUCGGccucccGCGGCc- -3'
miRNA:   3'- -UUGAGGa---GuCGGGGGAGUU------CGCCGau -5'
28789 3' -60 NC_006146.1 + 28445 0.68 0.607167
Target:  5'- aGACUCCg-GGCCCCa--AGGCGGCc- -3'
miRNA:   3'- -UUGAGGagUCGGGGgagUUCGCCGau -5'
28789 3' -60 NC_006146.1 + 53182 0.68 0.607167
Target:  5'- aGGCUcggCCUCGGCCCcggCCUUgggGGGCGGCg- -3'
miRNA:   3'- -UUGA---GGAGUCGGG---GGAG---UUCGCCGau -5'
28789 3' -60 NC_006146.1 + 163000 0.68 0.576853
Target:  5'- -uCUCCUCGGCCUCCUCuuuG-GGCc- -3'
miRNA:   3'- uuGAGGAGUCGGGGGAGuu-CgCCGau -5'
28789 3' -60 NC_006146.1 + 152184 0.67 0.627479
Target:  5'- aAACUCaguCUCuGCCUCCUCGAGCaGCc- -3'
miRNA:   3'- -UUGAG---GAGuCGGGGGAGUUCGcCGau -5'
28789 3' -60 NC_006146.1 + 111132 0.67 0.647805
Target:  5'- cAC-CCUCAaCCCCCagguggcCGGGCGGCUGg -3'
miRNA:   3'- uUGaGGAGUcGGGGGa------GUUCGCCGAU- -5'
28789 3' -60 NC_006146.1 + 13055 0.68 0.607167
Target:  5'- aGACUCCg-GGCCCCa--AGGCGGCc- -3'
miRNA:   3'- -UUGAGGagUCGGGGgagUUCGCCGau -5'
28789 3' -60 NC_006146.1 + 25367 0.68 0.607167
Target:  5'- aGACUCCg-GGCCCCa--AGGCGGCc- -3'
miRNA:   3'- -UUGAGGagUCGGGGgagUUCGCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.