miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28789 3' -60 NC_006146.1 + 157534 0.66 0.69826
Target:  5'- gGGC-CCUgGGCCCCga-GGGCGGCUc -3'
miRNA:   3'- -UUGaGGAgUCGGGGgagUUCGCCGAu -5'
28789 3' -60 NC_006146.1 + 119712 0.7 0.488634
Target:  5'- uGCUCCaCAGCUUCCUCGAGCaGCc- -3'
miRNA:   3'- uUGAGGaGUCGGGGGAGUUCGcCGau -5'
28789 3' -60 NC_006146.1 + 144186 0.69 0.507755
Target:  5'- uGCUCCUguGCCCgCCUC--GgGGCUGc -3'
miRNA:   3'- uUGAGGAguCGGG-GGAGuuCgCCGAU- -5'
28789 3' -60 NC_006146.1 + 147264 0.69 0.507755
Target:  5'- uGCUCCUguGCCCgCCUC--GgGGCUGc -3'
miRNA:   3'- uUGAGGAguCGGG-GGAGuuCgCCGAU- -5'
28789 3' -60 NC_006146.1 + 150342 0.69 0.507755
Target:  5'- uGCUCCUguGCCCgCCUC--GgGGCUGc -3'
miRNA:   3'- uUGAGGAguCGGG-GGAGuuCgCCGAU- -5'
28789 3' -60 NC_006146.1 + 153420 0.69 0.507755
Target:  5'- uGCUCCUguGCCCgCCUC--GgGGCUGc -3'
miRNA:   3'- uUGAGGAguCGGG-GGAGuuCgCCGAU- -5'
28789 3' -60 NC_006146.1 + 156498 0.69 0.507755
Target:  5'- uGCUCCUguGCCCgCCUC--GgGGCUGc -3'
miRNA:   3'- uUGAGGAguCGGG-GGAGuuCgCCGAU- -5'
28789 3' -60 NC_006146.1 + 73543 0.69 0.517434
Target:  5'- aGGCUCCggAGCUCCC-CGGGCGGgUGg -3'
miRNA:   3'- -UUGAGGagUCGGGGGaGUUCGCCgAU- -5'
28789 3' -60 NC_006146.1 + 15103 0.69 0.546888
Target:  5'- uGACUCggUGGCCCCCagggccacCGAGCGGCUc -3'
miRNA:   3'- -UUGAGgaGUCGGGGGa-------GUUCGCCGAu -5'
28789 3' -60 NC_006146.1 + 42028 0.68 0.607167
Target:  5'- gGGCccgCCUCcGCCCCCUCuucGUGGCc- -3'
miRNA:   3'- -UUGa--GGAGuCGGGGGAGuu-CGCCGau -5'
28789 3' -60 NC_006146.1 + 728 0.67 0.627479
Target:  5'- cGC-CCUCgggAGCCCCCUCAgcccccGGcCGGCg- -3'
miRNA:   3'- uUGaGGAG---UCGGGGGAGU------UC-GCCGau -5'
28789 3' -60 NC_006146.1 + 1659 0.67 0.627479
Target:  5'- cGC-CCUCgggAGCCCCCUCAgcccccGGcCGGCg- -3'
miRNA:   3'- uUGaGGAG---UCGGGGGAGU------UC-GCCGau -5'
28789 3' -60 NC_006146.1 + 2591 0.67 0.627479
Target:  5'- cGC-CCUCgggAGCCCCCUCAgcccccGGcCGGCg- -3'
miRNA:   3'- uUGaGGAG---UCGGGGGAGU------UC-GCCGau -5'
28789 3' -60 NC_006146.1 + 3523 0.67 0.627479
Target:  5'- cGC-CCUCgggAGCCCCCUCAgcccccGGcCGGCg- -3'
miRNA:   3'- uUGaGGAG---UCGGGGGAGU------UC-GCCGau -5'
28789 3' -60 NC_006146.1 + 142144 0.66 0.69826
Target:  5'- gGGC-CCUgGGCCCCga-GGGCGGCUc -3'
miRNA:   3'- -UUGaGGAgUCGGGGgagUUCGCCGAu -5'
28789 3' -60 NC_006146.1 + 145222 0.66 0.69826
Target:  5'- gGGC-CCUgGGCCCCga-GGGCGGCUc -3'
miRNA:   3'- -UUGaGGAgUCGGGGgagUUCGCCGAu -5'
28789 3' -60 NC_006146.1 + 148300 0.66 0.69826
Target:  5'- gGGC-CCUgGGCCCCga-GGGCGGCUc -3'
miRNA:   3'- -UUGaGGAgUCGGGGgagUUCGCCGAu -5'
28789 3' -60 NC_006146.1 + 151378 0.66 0.69826
Target:  5'- gGGC-CCUgGGCCCCga-GGGCGGCUc -3'
miRNA:   3'- -UUGaGGAgUCGGGGgagUUCGCCGAu -5'
28789 3' -60 NC_006146.1 + 154456 0.66 0.69826
Target:  5'- gGGC-CCUgGGCCCCga-GGGCGGCUc -3'
miRNA:   3'- -UUGaGGAgUCGGGGgagUUCGCCGAu -5'
28789 3' -60 NC_006146.1 + 80249 0.66 0.708222
Target:  5'- ---aCCUCuGCCaCCCUCGccGCGGCg- -3'
miRNA:   3'- uugaGGAGuCGG-GGGAGUu-CGCCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.