Results 1 - 20 of 62 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28789 | 3' | -60 | NC_006146.1 | + | 157534 | 0.66 | 0.69826 |
Target: 5'- gGGC-CCUgGGCCCCga-GGGCGGCUc -3' miRNA: 3'- -UUGaGGAgUCGGGGgagUUCGCCGAu -5' |
|||||||
28789 | 3' | -60 | NC_006146.1 | + | 119712 | 0.7 | 0.488634 |
Target: 5'- uGCUCCaCAGCUUCCUCGAGCaGCc- -3' miRNA: 3'- uUGAGGaGUCGGGGGAGUUCGcCGau -5' |
|||||||
28789 | 3' | -60 | NC_006146.1 | + | 144186 | 0.69 | 0.507755 |
Target: 5'- uGCUCCUguGCCCgCCUC--GgGGCUGc -3' miRNA: 3'- uUGAGGAguCGGG-GGAGuuCgCCGAU- -5' |
|||||||
28789 | 3' | -60 | NC_006146.1 | + | 147264 | 0.69 | 0.507755 |
Target: 5'- uGCUCCUguGCCCgCCUC--GgGGCUGc -3' miRNA: 3'- uUGAGGAguCGGG-GGAGuuCgCCGAU- -5' |
|||||||
28789 | 3' | -60 | NC_006146.1 | + | 150342 | 0.69 | 0.507755 |
Target: 5'- uGCUCCUguGCCCgCCUC--GgGGCUGc -3' miRNA: 3'- uUGAGGAguCGGG-GGAGuuCgCCGAU- -5' |
|||||||
28789 | 3' | -60 | NC_006146.1 | + | 153420 | 0.69 | 0.507755 |
Target: 5'- uGCUCCUguGCCCgCCUC--GgGGCUGc -3' miRNA: 3'- uUGAGGAguCGGG-GGAGuuCgCCGAU- -5' |
|||||||
28789 | 3' | -60 | NC_006146.1 | + | 156498 | 0.69 | 0.507755 |
Target: 5'- uGCUCCUguGCCCgCCUC--GgGGCUGc -3' miRNA: 3'- uUGAGGAguCGGG-GGAGuuCgCCGAU- -5' |
|||||||
28789 | 3' | -60 | NC_006146.1 | + | 73543 | 0.69 | 0.517434 |
Target: 5'- aGGCUCCggAGCUCCC-CGGGCGGgUGg -3' miRNA: 3'- -UUGAGGagUCGGGGGaGUUCGCCgAU- -5' |
|||||||
28789 | 3' | -60 | NC_006146.1 | + | 15103 | 0.69 | 0.546888 |
Target: 5'- uGACUCggUGGCCCCCagggccacCGAGCGGCUc -3' miRNA: 3'- -UUGAGgaGUCGGGGGa-------GUUCGCCGAu -5' |
|||||||
28789 | 3' | -60 | NC_006146.1 | + | 42028 | 0.68 | 0.607167 |
Target: 5'- gGGCccgCCUCcGCCCCCUCuucGUGGCc- -3' miRNA: 3'- -UUGa--GGAGuCGGGGGAGuu-CGCCGau -5' |
|||||||
28789 | 3' | -60 | NC_006146.1 | + | 728 | 0.67 | 0.627479 |
Target: 5'- cGC-CCUCgggAGCCCCCUCAgcccccGGcCGGCg- -3' miRNA: 3'- uUGaGGAG---UCGGGGGAGU------UC-GCCGau -5' |
|||||||
28789 | 3' | -60 | NC_006146.1 | + | 1659 | 0.67 | 0.627479 |
Target: 5'- cGC-CCUCgggAGCCCCCUCAgcccccGGcCGGCg- -3' miRNA: 3'- uUGaGGAG---UCGGGGGAGU------UC-GCCGau -5' |
|||||||
28789 | 3' | -60 | NC_006146.1 | + | 2591 | 0.67 | 0.627479 |
Target: 5'- cGC-CCUCgggAGCCCCCUCAgcccccGGcCGGCg- -3' miRNA: 3'- uUGaGGAG---UCGGGGGAGU------UC-GCCGau -5' |
|||||||
28789 | 3' | -60 | NC_006146.1 | + | 3523 | 0.67 | 0.627479 |
Target: 5'- cGC-CCUCgggAGCCCCCUCAgcccccGGcCGGCg- -3' miRNA: 3'- uUGaGGAG---UCGGGGGAGU------UC-GCCGau -5' |
|||||||
28789 | 3' | -60 | NC_006146.1 | + | 142144 | 0.66 | 0.69826 |
Target: 5'- gGGC-CCUgGGCCCCga-GGGCGGCUc -3' miRNA: 3'- -UUGaGGAgUCGGGGgagUUCGCCGAu -5' |
|||||||
28789 | 3' | -60 | NC_006146.1 | + | 145222 | 0.66 | 0.69826 |
Target: 5'- gGGC-CCUgGGCCCCga-GGGCGGCUc -3' miRNA: 3'- -UUGaGGAgUCGGGGgagUUCGCCGAu -5' |
|||||||
28789 | 3' | -60 | NC_006146.1 | + | 148300 | 0.66 | 0.69826 |
Target: 5'- gGGC-CCUgGGCCCCga-GGGCGGCUc -3' miRNA: 3'- -UUGaGGAgUCGGGGgagUUCGCCGAu -5' |
|||||||
28789 | 3' | -60 | NC_006146.1 | + | 151378 | 0.66 | 0.69826 |
Target: 5'- gGGC-CCUgGGCCCCga-GGGCGGCUc -3' miRNA: 3'- -UUGaGGAgUCGGGGgagUUCGCCGAu -5' |
|||||||
28789 | 3' | -60 | NC_006146.1 | + | 154456 | 0.66 | 0.69826 |
Target: 5'- gGGC-CCUgGGCCCCga-GGGCGGCUc -3' miRNA: 3'- -UUGaGGAgUCGGGGgagUUCGCCGAu -5' |
|||||||
28789 | 3' | -60 | NC_006146.1 | + | 80249 | 0.66 | 0.708222 |
Target: 5'- ---aCCUCuGCCaCCCUCGccGCGGCg- -3' miRNA: 3'- uugaGGAGuCGG-GGGAGUu-CGCCGau -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home