miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28789 3' -60 NC_006146.1 + 143010 0.66 0.69826
Target:  5'- cAGCUCC-CGGUCCCCUCcgcuuGCGuGCc- -3'
miRNA:   3'- -UUGAGGaGUCGGGGGAGuu---CGC-CGau -5'
28789 3' -60 NC_006146.1 + 146917 0.67 0.627479
Target:  5'- cGCgUCCUCuuucGCCCCCUCuc-CGGCUc -3'
miRNA:   3'- uUG-AGGAGu---CGGGGGAGuucGCCGAu -5'
28789 3' -60 NC_006146.1 + 86057 0.67 0.627479
Target:  5'- cGGCUCCUcCAGCUUCUggaUCAAGgGGCa- -3'
miRNA:   3'- -UUGAGGA-GUCGGGGG---AGUUCgCCGau -5'
28789 3' -60 NC_006146.1 + 13200 0.66 0.71812
Target:  5'- cGCUCCgggcGCCUCCUCGGGUucagccgcuGGCUGg -3'
miRNA:   3'- uUGAGGagu-CGGGGGAGUUCG---------CCGAU- -5'
28789 3' -60 NC_006146.1 + 141555 0.66 0.708222
Target:  5'- cACcCCUCAGCCCCCUCuguuccuUGGUg- -3'
miRNA:   3'- uUGaGGAGUCGGGGGAGuuc----GCCGau -5'
28789 3' -60 NC_006146.1 + 142121 0.68 0.607167
Target:  5'- gAGC-CCUCGGCCCCaggguaugCUCccAGUGGCUGu -3'
miRNA:   3'- -UUGaGGAGUCGGGG--------GAGu-UCGCCGAU- -5'
28789 3' -60 NC_006146.1 + 84278 0.66 0.71812
Target:  5'- uGugUCCUgccCAGCugCCCCUCAAGCccaGCUGc -3'
miRNA:   3'- -UugAGGA---GUCG--GGGGAGUUCGc--CGAU- -5'
28789 3' -60 NC_006146.1 + 25512 0.66 0.71812
Target:  5'- cGCUCCgggcGCCUCCUCGGGUucagccgcuGGCUGg -3'
miRNA:   3'- uUGAGGagu-CGGGGGAGUUCG---------CCGAU- -5'
28789 3' -60 NC_006146.1 + 111132 0.67 0.647805
Target:  5'- cAC-CCUCAaCCCCCagguggcCGGGCGGCUGg -3'
miRNA:   3'- uUGaGGAGUcGGGGGa------GUUCGCCGAU- -5'
28789 3' -60 NC_006146.1 + 152184 0.67 0.627479
Target:  5'- aAACUCaguCUCuGCCUCCUCGAGCaGCc- -3'
miRNA:   3'- -UUGAG---GAGuCGGGGGAGUUCGcCGau -5'
28789 3' -60 NC_006146.1 + 53182 0.68 0.607167
Target:  5'- aGGCUcggCCUCGGCCCcggCCUUgggGGGCGGCg- -3'
miRNA:   3'- -UUGA---GGAGUCGGG---GGAG---UUCGCCGau -5'
28789 3' -60 NC_006146.1 + 16278 0.66 0.71812
Target:  5'- cGCUCCgggcGCCUCCUCGGGUucagccgcuGGCUGg -3'
miRNA:   3'- uUGAGGagu-CGGGGGAGUUCG---------CCGAU- -5'
28789 3' -60 NC_006146.1 + 119561 1.04 0.002322
Target:  5'- cAACUCCUCAGCCCCCUCAAGCGGCUAc -3'
miRNA:   3'- -UUGAGGAGUCGGGGGAGUUCGCCGAU- -5'
28789 3' -60 NC_006146.1 + 15103 0.69 0.546888
Target:  5'- uGACUCggUGGCCCCCagggccacCGAGCGGCUc -3'
miRNA:   3'- -UUGAGgaGUCGGGGGa-------GUUCGCCGAu -5'
28789 3' -60 NC_006146.1 + 42028 0.68 0.607167
Target:  5'- gGGCccgCCUCcGCCCCCUCuucGUGGCc- -3'
miRNA:   3'- -UUGa--GGAGuCGGGGGAGuu-CGCCGau -5'
28789 3' -60 NC_006146.1 + 119591 1.04 0.002322
Target:  5'- cAACUCCUCAGCCCCCUCAAGCGGCUAc -3'
miRNA:   3'- -UUGAGGAGUCGGGGGAGUUCGCCGAU- -5'
28789 3' -60 NC_006146.1 + 119621 1.04 0.002322
Target:  5'- cAACUCCUCAGCCCCCUCAAGCGGCUAc -3'
miRNA:   3'- -UUGAGGAGUCGGGGGAGUUCGCCGAU- -5'
28789 3' -60 NC_006146.1 + 119681 0.77 0.171498
Target:  5'- cAACUCCUCAGCCCCCcCAAGCa---- -3'
miRNA:   3'- -UUGAGGAGUCGGGGGaGUUCGccgau -5'
28789 3' -60 NC_006146.1 + 114567 0.71 0.407261
Target:  5'- uGCUCCgggCGGCCuCCUUCucGCGGCg- -3'
miRNA:   3'- uUGAGGa--GUCGG-GGGAGuuCGCCGau -5'
28789 3' -60 NC_006146.1 + 145222 0.66 0.69826
Target:  5'- gGGC-CCUgGGCCCCga-GGGCGGCUc -3'
miRNA:   3'- -UUGaGGAgUCGGGGgagUUCGCCGAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.