Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28789 | 3' | -60 | NC_006146.1 | + | 53006 | 0.69 | 0.507755 |
Target: 5'- -cCUCUUCuGGCCCugggCCUCAcGCGGCUGg -3' miRNA: 3'- uuGAGGAG-UCGGG----GGAGUuCGCCGAU- -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 53182 | 0.68 | 0.607167 |
Target: 5'- aGGCUcggCCUCGGCCCcggCCUUgggGGGCGGCg- -3' miRNA: 3'- -UUGA---GGAGUCGGG---GGAG---UUCGCCGau -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 56822 | 0.68 | 0.597034 |
Target: 5'- gGGCUUCU-GGCCCCCg-AGGCGGCc- -3' miRNA: 3'- -UUGAGGAgUCGGGGGagUUCGCCGau -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 65045 | 0.67 | 0.657954 |
Target: 5'- -cCUCCcCGGCUUCCUCGAGCucuuGGCa- -3' miRNA: 3'- uuGAGGaGUCGGGGGAGUUCG----CCGau -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 73543 | 0.69 | 0.517434 |
Target: 5'- aGGCUCCggAGCUCCC-CGGGCGGgUGg -3' miRNA: 3'- -UUGAGGagUCGGGGGaGUUCGCCgAU- -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 80249 | 0.66 | 0.708222 |
Target: 5'- ---aCCUCuGCCaCCCUCGccGCGGCg- -3' miRNA: 3'- uugaGGAGuCGG-GGGAGUu-CGCCGau -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 84278 | 0.66 | 0.71812 |
Target: 5'- uGugUCCUgccCAGCugCCCCUCAAGCccaGCUGc -3' miRNA: 3'- -UugAGGA---GUCG--GGGGAGUUCGc--CGAU- -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 86057 | 0.67 | 0.627479 |
Target: 5'- cGGCUCCUcCAGCUUCUggaUCAAGgGGCa- -3' miRNA: 3'- -UUGAGGA-GUCGGGGG---AGUUCgCCGau -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 87704 | 0.66 | 0.678182 |
Target: 5'- uGGCUCCaUAGCCaCCCUCucccAGCuGCUGc -3' miRNA: 3'- -UUGAGGaGUCGG-GGGAGu---UCGcCGAU- -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 111132 | 0.67 | 0.647805 |
Target: 5'- cAC-CCUCAaCCCCCagguggcCGGGCGGCUGg -3' miRNA: 3'- uUGaGGAGUcGGGGGa------GUUCGCCGAU- -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 113898 | 0.67 | 0.614271 |
Target: 5'- -cCUCCUCggccauGGCCCCCUucuaucuuaaccagCAGGUGGCc- -3' miRNA: 3'- uuGAGGAG------UCGGGGGA--------------GUUCGCCGau -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 114567 | 0.71 | 0.407261 |
Target: 5'- uGCUCCgggCGGCCuCCUUCucGCGGCg- -3' miRNA: 3'- uUGAGGa--GUCGG-GGGAGuuCGCCGau -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 119324 | 0.7 | 0.451458 |
Target: 5'- uGGCUCCccCGGgCCCCUCccGGCGGCg- -3' miRNA: 3'- -UUGAGGa-GUCgGGGGAGu-UCGCCGau -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 119501 | 1.04 | 0.002322 |
Target: 5'- cAACUCCUCAGCCCCCUCAAGCGGCUAc -3' miRNA: 3'- -UUGAGGAGUCGGGGGAGUUCGCCGAU- -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 119531 | 1.04 | 0.002322 |
Target: 5'- cAACUCCUCAGCCCCCUCAAGCGGCUAc -3' miRNA: 3'- -UUGAGGAGUCGGGGGAGUUCGCCGAU- -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 119561 | 1.04 | 0.002322 |
Target: 5'- cAACUCCUCAGCCCCCUCAAGCGGCUAc -3' miRNA: 3'- -UUGAGGAGUCGGGGGAGUUCGCCGAU- -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 119591 | 1.04 | 0.002322 |
Target: 5'- cAACUCCUCAGCCCCCUCAAGCGGCUAc -3' miRNA: 3'- -UUGAGGAGUCGGGGGAGUUCGCCGAU- -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 119621 | 1.04 | 0.002322 |
Target: 5'- cAACUCCUCAGCCCCCUCAAGCGGCUAc -3' miRNA: 3'- -UUGAGGAGUCGGGGGAGUUCGCCGAU- -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 119651 | 1.04 | 0.002322 |
Target: 5'- cAACUCCUCAGCCCCCUCAAGCGGCUAc -3' miRNA: 3'- -UUGAGGAGUCGGGGGAGUUCGCCGAU- -5' |
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28789 | 3' | -60 | NC_006146.1 | + | 119681 | 0.77 | 0.171498 |
Target: 5'- cAACUCCUCAGCCCCCcCAAGCa---- -3' miRNA: 3'- -UUGAGGAGUCGGGGGaGUUCGccgau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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