miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28792 3' -57.5 NC_006146.1 + 116944 1.08 0.002673
Target:  5'- cCUGUGGGAAAACGCCCGUGAGCCCCUg -3'
miRNA:   3'- -GACACCCUUUUGCGGGCACUCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 118633 0.76 0.362048
Target:  5'- -cGUGGGG--GCGCCCG-GGGCCCa- -3'
miRNA:   3'- gaCACCCUuuUGCGGGCaCUCGGGga -5'
28792 3' -57.5 NC_006146.1 + 26832 0.75 0.377997
Target:  5'- -cGUGGGGAGAaugacUGCCCGagccgacugUGAGCCCCc -3'
miRNA:   3'- gaCACCCUUUU-----GCGGGC---------ACUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 47715 0.75 0.402791
Target:  5'- -gGUGGGGAgcAGCGCCCG-GAGCUCg- -3'
miRNA:   3'- gaCACCCUU--UUGCGGGCaCUCGGGga -5'
28792 3' -57.5 NC_006146.1 + 33278 0.74 0.419883
Target:  5'- -gGUGGGggGugGCCCGgcUGGGCaCCgCUg -3'
miRNA:   3'- gaCACCCuuUugCGGGC--ACUCG-GG-GA- -5'
28792 3' -57.5 NC_006146.1 + 33400 0.74 0.419883
Target:  5'- -gGUGGGggGugGCCCGccUGGGCaCCgCUg -3'
miRNA:   3'- gaCACCCuuUugCGGGC--ACUCG-GG-GA- -5'
28792 3' -57.5 NC_006146.1 + 13270 0.74 0.428592
Target:  5'- ---aGGGGAccGGCGCCCcaGAGCCCCUc -3'
miRNA:   3'- gacaCCCUU--UUGCGGGcaCUCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 16348 0.74 0.428592
Target:  5'- ---aGGGGAccGGCGCCCcaGAGCCCCUc -3'
miRNA:   3'- gacaCCCUU--UUGCGGGcaCUCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 19426 0.74 0.428592
Target:  5'- ---aGGGGAccGGCGCCCcaGAGCCCCUc -3'
miRNA:   3'- gacaCCCUU--UUGCGGGcaCUCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 22504 0.74 0.428592
Target:  5'- ---aGGGGAccGGCGCCCcaGAGCCCCUc -3'
miRNA:   3'- gacaCCCUU--UUGCGGGcaCUCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 25582 0.74 0.428592
Target:  5'- ---aGGGGAccGGCGCCCcaGAGCCCCUc -3'
miRNA:   3'- gacaCCCUU--UUGCGGGcaCUCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 28660 0.74 0.428592
Target:  5'- ---aGGGGAccGGCGCCCcaGAGCCCCUc -3'
miRNA:   3'- gacaCCCUU--UUGCGGGcaCUCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 120106 0.74 0.437406
Target:  5'- --cUGGGAccguacGGACGCCCGUGuGCCCa- -3'
miRNA:   3'- gacACCCU------UUUGCGGGCACuCGGGga -5'
28792 3' -57.5 NC_006146.1 + 33154 0.74 0.446324
Target:  5'- -gGUGGGggGugGCCCGgcUGGGCaCCg -3'
miRNA:   3'- gaCACCCuuUugCGGGC--ACUCGgGGa -5'
28792 3' -57.5 NC_006146.1 + 115838 0.73 0.515218
Target:  5'- gCUGUGGGuccgauacggcCGCCUGUGgcaGGCCCCg -3'
miRNA:   3'- -GACACCCuuuu-------GCGGGCAC---UCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 148702 0.72 0.530695
Target:  5'- --aUGGGggGAauaGCCUGUGAGUUCCg -3'
miRNA:   3'- gacACCCuuUUg--CGGGCACUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 166023 0.72 0.540455
Target:  5'- uUGUGGGcaucgGGggUGCCUGUG-GCCCCc -3'
miRNA:   3'- gACACCC-----UUuuGCGGGCACuCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 67004 0.72 0.560147
Target:  5'- gUGUaGGAGAugGCCCGggUGAGCCgCg -3'
miRNA:   3'- gACAcCCUUUugCGGGC--ACUCGGgGa -5'
28792 3' -57.5 NC_006146.1 + 54497 0.7 0.650413
Target:  5'- -cGUGGGAggAGACuCCCcaGGGCCCCg -3'
miRNA:   3'- gaCACCCU--UUUGcGGGcaCUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 8625 0.7 0.660472
Target:  5'- ---aGGGAuuuACGCCCcagcGAGCCCCa -3'
miRNA:   3'- gacaCCCUuu-UGCGGGca--CUCGGGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.