miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28792 3' -57.5 NC_006146.1 + 6437 0.66 0.875684
Target:  5'- aUGUGGGcccuGGgGUCCaugGGGCCCCa -3'
miRNA:   3'- gACACCCuu--UUgCGGGca-CUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 6652 0.68 0.748997
Target:  5'- ---aGGGAGGugGCCCaccaGGCCCCa -3'
miRNA:   3'- gacaCCCUUUugCGGGcac-UCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 8625 0.7 0.660472
Target:  5'- ---aGGGAuuuACGCCCcagcGAGCCCCa -3'
miRNA:   3'- gacaCCCUuu-UGCGGGca--CUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 8710 0.68 0.762204
Target:  5'- cCUGUGGGGcggaguuugcaccccAAaaucacACGgguCUCGUGAGCCCCa -3'
miRNA:   3'- -GACACCCU---------------UU------UGC---GGGCACUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 10662 0.69 0.720069
Target:  5'- aUGUGGGAcggGGAgGCCCG-GGGCgauaCCCg -3'
miRNA:   3'- gACACCCU---UUUgCGGGCaCUCG----GGGa -5'
28792 3' -57.5 NC_006146.1 + 13270 0.74 0.428592
Target:  5'- ---aGGGGAccGGCGCCCcaGAGCCCCUc -3'
miRNA:   3'- gacaCCCUU--UUGCGGGcaCUCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 13929 0.67 0.821123
Target:  5'- -aGUGGcGGGuGgGCCCGgggGAGCCCa- -3'
miRNA:   3'- gaCACC-CUUuUgCGGGCa--CUCGGGga -5'
28792 3' -57.5 NC_006146.1 + 14558 0.66 0.844854
Target:  5'- gCUGcUGGGc---CGCUuucggggCGUGAGCCCCa -3'
miRNA:   3'- -GAC-ACCCuuuuGCGG-------GCACUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 16348 0.74 0.428592
Target:  5'- ---aGGGGAccGGCGCCCcaGAGCCCCUc -3'
miRNA:   3'- gacaCCCUU--UUGCGGGcaCUCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 19426 0.74 0.428592
Target:  5'- ---aGGGGAccGGCGCCCcaGAGCCCCUc -3'
miRNA:   3'- gacaCCCUU--UUGCGGGcaCUCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 22504 0.74 0.428592
Target:  5'- ---aGGGGAccGGCGCCCcaGAGCCCCUc -3'
miRNA:   3'- gacaCCCUU--UUGCGGGcaCUCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 25582 0.74 0.428592
Target:  5'- ---aGGGGAccGGCGCCCcaGAGCCCCUc -3'
miRNA:   3'- gacaCCCUU--UUGCGGGcaCUCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 26832 0.75 0.377997
Target:  5'- -cGUGGGGAGAaugacUGCCCGagccgacugUGAGCCCCc -3'
miRNA:   3'- gaCACCCUUUU-----GCGGGC---------ACUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 28660 0.74 0.428592
Target:  5'- ---aGGGGAccGGCGCCCcaGAGCCCCUc -3'
miRNA:   3'- gacaCCCUU--UUGCGGGcaCUCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 33154 0.74 0.446324
Target:  5'- -gGUGGGggGugGCCCGgcUGGGCaCCg -3'
miRNA:   3'- gaCACCCuuUugCGGGC--ACUCGgGGa -5'
28792 3' -57.5 NC_006146.1 + 33278 0.74 0.419883
Target:  5'- -gGUGGGggGugGCCCGgcUGGGCaCCgCUg -3'
miRNA:   3'- gaCACCCuuUugCGGGC--ACUCG-GG-GA- -5'
28792 3' -57.5 NC_006146.1 + 33400 0.74 0.419883
Target:  5'- -gGUGGGggGugGCCCGccUGGGCaCCgCUg -3'
miRNA:   3'- gaCACCCuuUugCGGGC--ACUCG-GG-GA- -5'
28792 3' -57.5 NC_006146.1 + 38997 0.68 0.786132
Target:  5'- ---gGGGcAGAugGUCCGUGAGCCg-- -3'
miRNA:   3'- gacaCCC-UUUugCGGGCACUCGGgga -5'
28792 3' -57.5 NC_006146.1 + 40505 0.66 0.845644
Target:  5'- -gGUGGaGAGAUGCUCGgGGGCCCa- -3'
miRNA:   3'- gaCACCcUUUUGCGGGCaCUCGGGga -5'
28792 3' -57.5 NC_006146.1 + 41509 0.67 0.803929
Target:  5'- ---gGGGAcGACGCCCGgcUGAcGCCCg- -3'
miRNA:   3'- gacaCCCUuUUGCGGGC--ACU-CGGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.