miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28792 3' -57.5 NC_006146.1 + 42382 0.67 0.812605
Target:  5'- -gGUGGGcgaGGGGCGCCCcaGGGCCaCCc -3'
miRNA:   3'- gaCACCC---UUUUGCGGGcaCUCGG-GGa -5'
28792 3' -57.5 NC_006146.1 + 44019 0.68 0.758452
Target:  5'- -cGgcgGGGAGggGGCGgCCGaGGGCCCCg -3'
miRNA:   3'- gaCa--CCCUU--UUGCgGGCaCUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 45845 0.69 0.739442
Target:  5'- ---gGGGAugGCGuCCCccGAGCCCCUu -3'
miRNA:   3'- gacaCCCUuuUGC-GGGcaCUCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 47715 0.75 0.402791
Target:  5'- -gGUGGGGAgcAGCGCCCG-GAGCUCg- -3'
miRNA:   3'- gaCACCCUU--UUGCGGGCaCUCGGGga -5'
28792 3' -57.5 NC_006146.1 + 48236 0.67 0.821122
Target:  5'- --cUGGGuGAGCGCCgCGcggaGGGCCCCc -3'
miRNA:   3'- gacACCCuUUUGCGG-GCa---CUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 50790 0.67 0.821123
Target:  5'- gUGUGGGcacacGGGCGUCCGUacGGUCCCa -3'
miRNA:   3'- gACACCCu----UUUGCGGGCAc-UCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 51732 0.67 0.812605
Target:  5'- aUG-GGGAGgcGGCGCCCcgagGUGGGCUUCUu -3'
miRNA:   3'- gACaCCCUU--UUGCGGG----CACUCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 54497 0.7 0.650413
Target:  5'- -cGUGGGAggAGACuCCCcaGGGCCCCg -3'
miRNA:   3'- gaCACCCU--UUUGcGGGcaCUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 57362 0.67 0.829473
Target:  5'- gUGaGGGAGgcugcggcgguGGCGCCgGUGggcuGGCCCCg -3'
miRNA:   3'- gACaCCCUU-----------UUGCGGgCAC----UCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 67004 0.72 0.560147
Target:  5'- gUGUaGGAGAugGCCCGggUGAGCCgCg -3'
miRNA:   3'- gACAcCCUUUugCGGGC--ACUCGGgGa -5'
28792 3' -57.5 NC_006146.1 + 68897 0.68 0.767799
Target:  5'- ---cGGGAGAcaGCCCa-GAGCCCCUa -3'
miRNA:   3'- gacaCCCUUUugCGGGcaCUCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 68923 0.68 0.786132
Target:  5'- ---aGGGAgccaGAGCcucuagccagaGCCCG-GAGCCCCUa -3'
miRNA:   3'- gacaCCCU----UUUG-----------CGGGCaCUCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 70979 0.66 0.875684
Target:  5'- ---cGGGGGuGCGaCCCG-GAGCCCgCUc -3'
miRNA:   3'- gacaCCCUUuUGC-GGGCaCUCGGG-GA- -5'
28792 3' -57.5 NC_006146.1 + 95525 0.7 0.670509
Target:  5'- gCUGUcGGGugcGGCGCCUGgccaGGGUCCCUa -3'
miRNA:   3'- -GACA-CCCuu-UUGCGGGCa---CUCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 95741 0.69 0.710268
Target:  5'- -aGUGGGggGG-GCUgGUGuuGGCCCCg -3'
miRNA:   3'- gaCACCCuuUUgCGGgCAC--UCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 105673 0.68 0.771505
Target:  5'- ---cGGGAAgcgaggucaccucugGACGCCCGggcucccaGGGCCCCc -3'
miRNA:   3'- gacaCCCUU---------------UUGCGGGCa-------CUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 113964 0.67 0.803929
Target:  5'- aCUGgaaGaGGGGggUGCCCGgGGGCUCCg -3'
miRNA:   3'- -GACa--C-CCUUuuGCGGGCaCUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 114322 0.67 0.821123
Target:  5'- ---cGGGcucGGCGCCCGgccGCCCCUg -3'
miRNA:   3'- gacaCCCuu-UUGCGGGCacuCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 115838 0.73 0.515218
Target:  5'- gCUGUGGGuccgauacggcCGCCUGUGgcaGGCCCCg -3'
miRNA:   3'- -GACACCCuuuu-------GCGGGCAC---UCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 116944 1.08 0.002673
Target:  5'- cCUGUGGGAAAACGCCCGUGAGCCCCUg -3'
miRNA:   3'- -GACACCCUUUUGCGGGCACUCGGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.