miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28792 3' -57.5 NC_006146.1 + 168113 0.7 0.669506
Target:  5'- ---cGGGAGGccggcgcGCGCCCG-GGGUCCCg -3'
miRNA:   3'- gacaCCCUUU-------UGCGGGCaCUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 33154 0.74 0.446324
Target:  5'- -gGUGGGggGugGCCCGgcUGGGCaCCg -3'
miRNA:   3'- gaCACCCuuUugCGGGC--ACUCGgGGa -5'
28792 3' -57.5 NC_006146.1 + 169123 0.66 0.882679
Target:  5'- aUGUcGGGGAGG-GCCCG-GGGCCgCg -3'
miRNA:   3'- gACA-CCCUUUUgCGGGCaCUCGGgGa -5'
28792 3' -57.5 NC_006146.1 + 48236 0.67 0.821122
Target:  5'- --cUGGGuGAGCGCCgCGcggaGGGCCCCc -3'
miRNA:   3'- gacACCCuUUUGCGG-GCa---CUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 95525 0.7 0.670509
Target:  5'- gCUGUcGGGugcGGCGCCUGgccaGGGUCCCUa -3'
miRNA:   3'- -GACA-CCCuu-UUGCGGGCa---CUCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 120106 0.74 0.437406
Target:  5'- --cUGGGAccguacGGACGCCCGUGuGCCCa- -3'
miRNA:   3'- gacACCCU------UUUGCGGGCACuCGGGga -5'
28792 3' -57.5 NC_006146.1 + 139278 0.67 0.821122
Target:  5'- -gGUGGcAGAGgGCCCGgccuUGAGCCCa- -3'
miRNA:   3'- gaCACCcUUUUgCGGGC----ACUCGGGga -5'
28792 3' -57.5 NC_006146.1 + 28660 0.74 0.428592
Target:  5'- ---aGGGGAccGGCGCCCcaGAGCCCCUc -3'
miRNA:   3'- gacaCCCUU--UUGCGGGcaCUCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 25582 0.74 0.428592
Target:  5'- ---aGGGGAccGGCGCCCcaGAGCCCCUc -3'
miRNA:   3'- gacaCCCUU--UUGCGGGcaCUCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 45845 0.69 0.739442
Target:  5'- ---gGGGAugGCGuCCCccGAGCCCCUu -3'
miRNA:   3'- gacaCCCUuuUGC-GGGcaCUCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 150925 0.66 0.880603
Target:  5'- -cGUGGGGccuccugaccucgcAGACGCCCcc-GGCCCUg -3'
miRNA:   3'- gaCACCCU--------------UUUGCGGGcacUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 54497 0.7 0.650413
Target:  5'- -cGUGGGAggAGACuCCCcaGGGCCCCg -3'
miRNA:   3'- gaCACCCU--UUUGcGGGcaCUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 148702 0.72 0.530695
Target:  5'- --aUGGGggGAauaGCCUGUGAGUUCCg -3'
miRNA:   3'- gacACCCuuUUg--CGGGCACUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 164329 0.68 0.777028
Target:  5'- uUGUcGGGGuuuuGugGCCCGUu-GCCCCc -3'
miRNA:   3'- gACA-CCCUu---UugCGGGCAcuCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 57362 0.67 0.829473
Target:  5'- gUGaGGGAGgcugcggcgguGGCGCCgGUGggcuGGCCCCg -3'
miRNA:   3'- gACaCCCUU-----------UUGCGGgCAC----UCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 170055 0.66 0.882679
Target:  5'- aUGUcGGGGAGG-GCCCG-GGGCCgCg -3'
miRNA:   3'- gACA-CCCUUUUgCGGGCaCUCGGgGa -5'
28792 3' -57.5 NC_006146.1 + 13929 0.67 0.821123
Target:  5'- -aGUGGcGGGuGgGCCCGgggGAGCCCa- -3'
miRNA:   3'- gaCACC-CUUuUgCGGGCa--CUCGGGga -5'
28792 3' -57.5 NC_006146.1 + 8625 0.7 0.660472
Target:  5'- ---aGGGAuuuACGCCCcagcGAGCCCCa -3'
miRNA:   3'- gacaCCCUuu-UGCGGGca--CUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 10662 0.69 0.720069
Target:  5'- aUGUGGGAcggGGAgGCCCG-GGGCgauaCCCg -3'
miRNA:   3'- gACACCCU---UUUgCGGGCaCUCG----GGGa -5'
28792 3' -57.5 NC_006146.1 + 95741 0.69 0.710268
Target:  5'- -aGUGGGggGG-GCUgGUGuuGGCCCCg -3'
miRNA:   3'- gaCACCCuuUUgCGGgCAC--UCGGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.