miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28792 3' -57.5 NC_006146.1 + 47715 0.75 0.402791
Target:  5'- -gGUGGGGAgcAGCGCCCG-GAGCUCg- -3'
miRNA:   3'- gaCACCCUU--UUGCGGGCaCUCGGGga -5'
28792 3' -57.5 NC_006146.1 + 169045 0.7 0.669506
Target:  5'- ---cGGGAGGccggcgcGCGCCCG-GGGUCCCg -3'
miRNA:   3'- gacaCCCUUU-------UGCGGGCaCUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 95525 0.7 0.670509
Target:  5'- gCUGUcGGGugcGGCGCCUGgccaGGGUCCCUa -3'
miRNA:   3'- -GACA-CCCuu-UUGCGGGCa---CUCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 170055 0.66 0.882679
Target:  5'- aUGUcGGGGAGG-GCCCG-GGGCCgCg -3'
miRNA:   3'- gACA-CCCUUUUgCGGGCaCUCGGgGa -5'
28792 3' -57.5 NC_006146.1 + 16348 0.74 0.428592
Target:  5'- ---aGGGGAccGGCGCCCcaGAGCCCCUc -3'
miRNA:   3'- gacaCCCUU--UUGCGGGcaCUCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 19426 0.74 0.428592
Target:  5'- ---aGGGGAccGGCGCCCcaGAGCCCCUc -3'
miRNA:   3'- gacaCCCUU--UUGCGGGcaCUCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 25582 0.74 0.428592
Target:  5'- ---aGGGGAccGGCGCCCcaGAGCCCCUc -3'
miRNA:   3'- gacaCCCUU--UUGCGGGcaCUCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 28660 0.74 0.428592
Target:  5'- ---aGGGGAccGGCGCCCcaGAGCCCCUc -3'
miRNA:   3'- gacaCCCUU--UUGCGGGcaCUCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 148702 0.72 0.530695
Target:  5'- --aUGGGggGAauaGCCUGUGAGUUCCg -3'
miRNA:   3'- gacACCCuuUUg--CGGGCACUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 168113 0.7 0.669506
Target:  5'- ---cGGGAGGccggcgcGCGCCCG-GGGUCCCg -3'
miRNA:   3'- gacaCCCUUU-------UGCGGGCaCUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 67004 0.72 0.560147
Target:  5'- gUGUaGGAGAugGCCCGggUGAGCCgCg -3'
miRNA:   3'- gACAcCCUUUugCGGGC--ACUCGGgGa -5'
28792 3' -57.5 NC_006146.1 + 33154 0.74 0.446324
Target:  5'- -gGUGGGggGugGCCCGgcUGGGCaCCg -3'
miRNA:   3'- gaCACCCuuUugCGGGC--ACUCGgGGa -5'
28792 3' -57.5 NC_006146.1 + 33278 0.74 0.419883
Target:  5'- -gGUGGGggGugGCCCGgcUGGGCaCCgCUg -3'
miRNA:   3'- gaCACCCuuUugCGGGC--ACUCG-GG-GA- -5'
28792 3' -57.5 NC_006146.1 + 54497 0.7 0.650413
Target:  5'- -cGUGGGAggAGACuCCCcaGGGCCCCg -3'
miRNA:   3'- gaCACCCU--UUUGcGGGcaCUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 33400 0.74 0.419883
Target:  5'- -gGUGGGggGugGCCCGccUGGGCaCCgCUg -3'
miRNA:   3'- gaCACCCuuUugCGGGC--ACUCG-GG-GA- -5'
28792 3' -57.5 NC_006146.1 + 120106 0.74 0.437406
Target:  5'- --cUGGGAccguacGGACGCCCGUGuGCCCa- -3'
miRNA:   3'- gacACCCU------UUUGCGGGCACuCGGGga -5'
28792 3' -57.5 NC_006146.1 + 167181 0.7 0.669506
Target:  5'- ---cGGGAGGccggcgcGCGCCCG-GGGUCCCg -3'
miRNA:   3'- gacaCCCUUU-------UGCGGGCaCUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 169977 0.7 0.669506
Target:  5'- ---cGGGAGGccggcgcGCGCCCG-GGGUCCCg -3'
miRNA:   3'- gacaCCCUUU-------UGCGGGCaCUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 13270 0.74 0.428592
Target:  5'- ---aGGGGAccGGCGCCCcaGAGCCCCUc -3'
miRNA:   3'- gacaCCCUU--UUGCGGGcaCUCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 22504 0.74 0.428592
Target:  5'- ---aGGGGAccGGCGCCCcaGAGCCCCUc -3'
miRNA:   3'- gacaCCCUU--UUGCGGGcaCUCGGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.