miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28792 3' -57.5 NC_006146.1 + 130387 0.68 0.777028
Target:  5'- ---cGGGAAAACa--CGUGGGCCCCc -3'
miRNA:   3'- gacaCCCUUUUGcggGCACUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 114322 0.67 0.821123
Target:  5'- ---cGGGcucGGCGCCCGgccGCCCCUg -3'
miRNA:   3'- gacaCCCuu-UUGCGGGCacuCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 50790 0.67 0.821123
Target:  5'- gUGUGGGcacacGGGCGUCCGUacGGUCCCa -3'
miRNA:   3'- gACACCCu----UUUGCGGGCAc-UCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 13929 0.67 0.821123
Target:  5'- -aGUGGcGGGuGgGCCCGgggGAGCCCa- -3'
miRNA:   3'- gaCACC-CUUuUgCGGGCa--CUCGGGga -5'
28792 3' -57.5 NC_006146.1 + 113964 0.67 0.803929
Target:  5'- aCUGgaaGaGGGGggUGCCCGgGGGCUCCg -3'
miRNA:   3'- -GACa--C-CCUUuuGCGGGCaCUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 42382 0.67 0.812605
Target:  5'- -gGUGGGcgaGGGGCGCCCcaGGGCCaCCc -3'
miRNA:   3'- gaCACCC---UUUUGCGGGcaCUCGG-GGa -5'
28792 3' -57.5 NC_006146.1 + 41509 0.67 0.803929
Target:  5'- ---gGGGAcGACGCCCGgcUGAcGCCCg- -3'
miRNA:   3'- gacaCCCUuUUGCGGGC--ACU-CGGGga -5'
28792 3' -57.5 NC_006146.1 + 126135 0.68 0.786132
Target:  5'- --cUGGGuucccCGCCCGccGGGCCCCg -3'
miRNA:   3'- gacACCCuuuu-GCGGGCa-CUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 68923 0.68 0.786132
Target:  5'- ---aGGGAgccaGAGCcucuagccagaGCCCG-GAGCCCCUa -3'
miRNA:   3'- gacaCCCU----UUUG-----------CGGGCaCUCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 130144 0.67 0.83765
Target:  5'- --uUGGGcAGGuccACGUCCGUGgccAGCCCCa -3'
miRNA:   3'- gacACCC-UUU---UGCGGGCAC---UCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 142740 0.67 0.83765
Target:  5'- gUGuUGGGAccugguGGCGCCCGccGGCUCCa -3'
miRNA:   3'- gAC-ACCCUu-----UUGCGGGCacUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 145818 0.67 0.83765
Target:  5'- gUGuUGGGAccugguGGCGCCCGccGGCUCCa -3'
miRNA:   3'- gAC-ACCCUu-----UUGCGGGCacUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 126478 0.66 0.875684
Target:  5'- ---cGGGugccAGAC-CCCGgGAGCCCCUc -3'
miRNA:   3'- gacaCCCu---UUUGcGGGCaCUCGGGGA- -5'
28792 3' -57.5 NC_006146.1 + 6437 0.66 0.875684
Target:  5'- aUGUGGGcccuGGgGUCCaugGGGCCCCa -3'
miRNA:   3'- gACACCCuu--UUgCGGGca-CUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 117242 0.66 0.868477
Target:  5'- --cUGGGcaAGAGCGUCUGUcgggcgcugacuGAGCCCCg -3'
miRNA:   3'- gacACCC--UUUUGCGGGCA------------CUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 14558 0.66 0.844854
Target:  5'- gCUGcUGGGc---CGCUuucggggCGUGAGCCCCa -3'
miRNA:   3'- -GAC-ACCCuuuuGCGG-------GCACUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 158131 0.67 0.83765
Target:  5'- gUGuUGGGAccugguGGCGCCCGccGGCUCCa -3'
miRNA:   3'- gAC-ACCCUu-----UUGCGGGCacUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 155052 0.67 0.83765
Target:  5'- gUGuUGGGAccugguGGCGCCCGccGGCUCCa -3'
miRNA:   3'- gAC-ACCCUu-----UUGCGGGCacUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 151974 0.67 0.83765
Target:  5'- gUGuUGGGAccugguGGCGCCCGccGGCUCCa -3'
miRNA:   3'- gAC-ACCCUu-----UUGCGGGCacUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 148896 0.67 0.83765
Target:  5'- gUGuUGGGAccugguGGCGCCCGccGGCUCCa -3'
miRNA:   3'- gAC-ACCCUu-----UUGCGGGCacUCGGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.