miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28792 3' -57.5 NC_006146.1 + 170055 0.66 0.882679
Target:  5'- aUGUcGGGGAGG-GCCCG-GGGCCgCg -3'
miRNA:   3'- gACA-CCCUUUUgCGGGCaCUCGGgGa -5'
28792 3' -57.5 NC_006146.1 + 169977 0.7 0.669506
Target:  5'- ---cGGGAGGccggcgcGCGCCCG-GGGUCCCg -3'
miRNA:   3'- gacaCCCUUU-------UGCGGGCaCUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 169123 0.66 0.882679
Target:  5'- aUGUcGGGGAGG-GCCCG-GGGCCgCg -3'
miRNA:   3'- gACA-CCCUUUUgCGGGCaCUCGGgGa -5'
28792 3' -57.5 NC_006146.1 + 169045 0.7 0.669506
Target:  5'- ---cGGGAGGccggcgcGCGCCCG-GGGUCCCg -3'
miRNA:   3'- gacaCCCUUU-------UGCGGGCaCUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 168191 0.66 0.882679
Target:  5'- aUGUcGGGGAGG-GCCCG-GGGCCgCg -3'
miRNA:   3'- gACA-CCCUUUUgCGGGCaCUCGGgGa -5'
28792 3' -57.5 NC_006146.1 + 168113 0.7 0.669506
Target:  5'- ---cGGGAGGccggcgcGCGCCCG-GGGUCCCg -3'
miRNA:   3'- gacaCCCUUU-------UGCGGGCaCUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 167259 0.66 0.882679
Target:  5'- aUGUcGGGGAGG-GCCCG-GGGCCgCg -3'
miRNA:   3'- gACA-CCCUUUUgCGGGCaCUCGGgGa -5'
28792 3' -57.5 NC_006146.1 + 167181 0.7 0.669506
Target:  5'- ---cGGGAGGccggcgcGCGCCCG-GGGUCCCg -3'
miRNA:   3'- gacaCCCUUU-------UGCGGGCaCUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 166023 0.72 0.540455
Target:  5'- uUGUGGGcaucgGGggUGCCUGUG-GCCCCc -3'
miRNA:   3'- gACACCC-----UUuuGCGGGCACuCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 164329 0.68 0.777028
Target:  5'- uUGUcGGGGuuuuGugGCCCGUu-GCCCCc -3'
miRNA:   3'- gACA-CCCUu---UugCGGGCAcuCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 159962 0.66 0.875683
Target:  5'- cCUGUGguaGGAGGugGCgCGcagGAGCCCg- -3'
miRNA:   3'- -GACAC---CCUUUugCGgGCa--CUCGGGga -5'
28792 3' -57.5 NC_006146.1 + 158131 0.67 0.83765
Target:  5'- gUGuUGGGAccugguGGCGCCCGccGGCUCCa -3'
miRNA:   3'- gAC-ACCCUu-----UUGCGGGCacUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 155052 0.67 0.83765
Target:  5'- gUGuUGGGAccugguGGCGCCCGccGGCUCCa -3'
miRNA:   3'- gAC-ACCCUu-----UUGCGGGCacUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 151974 0.67 0.83765
Target:  5'- gUGuUGGGAccugguGGCGCCCGccGGCUCCa -3'
miRNA:   3'- gAC-ACCCUu-----UUGCGGGCacUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 150925 0.66 0.880603
Target:  5'- -cGUGGGGccuccugaccucgcAGACGCCCcc-GGCCCUg -3'
miRNA:   3'- gaCACCCU--------------UUUGCGGGcacUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 148896 0.67 0.83765
Target:  5'- gUGuUGGGAccugguGGCGCCCGccGGCUCCa -3'
miRNA:   3'- gAC-ACCCUu-----UUGCGGGCacUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 148702 0.72 0.530695
Target:  5'- --aUGGGggGAauaGCCUGUGAGUUCCg -3'
miRNA:   3'- gacACCCuuUUg--CGGGCACUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 145818 0.67 0.83765
Target:  5'- gUGuUGGGAccugguGGCGCCCGccGGCUCCa -3'
miRNA:   3'- gAC-ACCCUu-----UUGCGGGCacUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 142740 0.67 0.83765
Target:  5'- gUGuUGGGAccugguGGCGCCCGccGGCUCCa -3'
miRNA:   3'- gAC-ACCCUu-----UUGCGGGCacUCGGGGa -5'
28792 3' -57.5 NC_006146.1 + 139278 0.67 0.821122
Target:  5'- -gGUGGcAGAGgGCCCGgccuUGAGCCCa- -3'
miRNA:   3'- gaCACCcUUUUgCGGGC----ACUCGGGga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.