Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28792 | 3' | -57.5 | NC_006146.1 | + | 50790 | 0.67 | 0.821123 |
Target: 5'- gUGUGGGcacacGGGCGUCCGUacGGUCCCa -3' miRNA: 3'- gACACCCu----UUUGCGGGCAc-UCGGGGa -5' |
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28792 | 3' | -57.5 | NC_006146.1 | + | 13929 | 0.67 | 0.821123 |
Target: 5'- -aGUGGcGGGuGgGCCCGgggGAGCCCa- -3' miRNA: 3'- gaCACC-CUUuUgCGGGCa--CUCGGGga -5' |
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28792 | 3' | -57.5 | NC_006146.1 | + | 114322 | 0.67 | 0.821123 |
Target: 5'- ---cGGGcucGGCGCCCGgccGCCCCUg -3' miRNA: 3'- gacaCCCuu-UUGCGGGCacuCGGGGA- -5' |
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28792 | 3' | -57.5 | NC_006146.1 | + | 48236 | 0.67 | 0.821122 |
Target: 5'- --cUGGGuGAGCGCCgCGcggaGGGCCCCc -3' miRNA: 3'- gacACCCuUUUGCGG-GCa---CUCGGGGa -5' |
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28792 | 3' | -57.5 | NC_006146.1 | + | 139278 | 0.67 | 0.821122 |
Target: 5'- -gGUGGcAGAGgGCCCGgccuUGAGCCCa- -3' miRNA: 3'- gaCACCcUUUUgCGGGC----ACUCGGGga -5' |
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28792 | 3' | -57.5 | NC_006146.1 | + | 42382 | 0.67 | 0.812605 |
Target: 5'- -gGUGGGcgaGGGGCGCCCcaGGGCCaCCc -3' miRNA: 3'- gaCACCC---UUUUGCGGGcaCUCGG-GGa -5' |
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28792 | 3' | -57.5 | NC_006146.1 | + | 51732 | 0.67 | 0.812605 |
Target: 5'- aUG-GGGAGgcGGCGCCCcgagGUGGGCUUCUu -3' miRNA: 3'- gACaCCCUU--UUGCGGG----CACUCGGGGA- -5' |
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28792 | 3' | -57.5 | NC_006146.1 | + | 41509 | 0.67 | 0.803929 |
Target: 5'- ---gGGGAcGACGCCCGgcUGAcGCCCg- -3' miRNA: 3'- gacaCCCUuUUGCGGGC--ACU-CGGGga -5' |
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28792 | 3' | -57.5 | NC_006146.1 | + | 113964 | 0.67 | 0.803929 |
Target: 5'- aCUGgaaGaGGGGggUGCCCGgGGGCUCCg -3' miRNA: 3'- -GACa--C-CCUUuuGCGGGCaCUCGGGGa -5' |
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28792 | 3' | -57.5 | NC_006146.1 | + | 38997 | 0.68 | 0.786132 |
Target: 5'- ---gGGGcAGAugGUCCGUGAGCCg-- -3' miRNA: 3'- gacaCCC-UUUugCGGGCACUCGGgga -5' |
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28792 | 3' | -57.5 | NC_006146.1 | + | 68923 | 0.68 | 0.786132 |
Target: 5'- ---aGGGAgccaGAGCcucuagccagaGCCCG-GAGCCCCUa -3' miRNA: 3'- gacaCCCU----UUUG-----------CGGGCaCUCGGGGA- -5' |
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28792 | 3' | -57.5 | NC_006146.1 | + | 126135 | 0.68 | 0.786132 |
Target: 5'- --cUGGGuucccCGCCCGccGGGCCCCg -3' miRNA: 3'- gacACCCuuuu-GCGGGCa-CUCGGGGa -5' |
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28792 | 3' | -57.5 | NC_006146.1 | + | 164329 | 0.68 | 0.777028 |
Target: 5'- uUGUcGGGGuuuuGugGCCCGUu-GCCCCc -3' miRNA: 3'- gACA-CCCUu---UugCGGGCAcuCGGGGa -5' |
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28792 | 3' | -57.5 | NC_006146.1 | + | 129274 | 0.68 | 0.777028 |
Target: 5'- aUGUGGGGcuggucuGCGCCCG--GGCCCa- -3' miRNA: 3'- gACACCCUuu-----UGCGGGCacUCGGGga -5' |
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28792 | 3' | -57.5 | NC_006146.1 | + | 130387 | 0.68 | 0.777028 |
Target: 5'- ---cGGGAAAACa--CGUGGGCCCCc -3' miRNA: 3'- gacaCCCUUUUGcggGCACUCGGGGa -5' |
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28792 | 3' | -57.5 | NC_006146.1 | + | 105673 | 0.68 | 0.771505 |
Target: 5'- ---cGGGAAgcgaggucaccucugGACGCCCGggcucccaGGGCCCCc -3' miRNA: 3'- gacaCCCUU---------------UUGCGGGCa-------CUCGGGGa -5' |
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28792 | 3' | -57.5 | NC_006146.1 | + | 68897 | 0.68 | 0.767799 |
Target: 5'- ---cGGGAGAcaGCCCa-GAGCCCCUa -3' miRNA: 3'- gacaCCCUUUugCGGGcaCUCGGGGA- -5' |
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28792 | 3' | -57.5 | NC_006146.1 | + | 8710 | 0.68 | 0.762204 |
Target: 5'- cCUGUGGGGcggaguuugcaccccAAaaucacACGgguCUCGUGAGCCCCa -3' miRNA: 3'- -GACACCCU---------------UU------UGC---GGGCACUCGGGGa -5' |
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28792 | 3' | -57.5 | NC_006146.1 | + | 139165 | 0.68 | 0.758452 |
Target: 5'- ---cGGGggGGCGCCUGUGAGgCg-- -3' miRNA: 3'- gacaCCCuuUUGCGGGCACUCgGgga -5' |
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28792 | 3' | -57.5 | NC_006146.1 | + | 44019 | 0.68 | 0.758452 |
Target: 5'- -cGgcgGGGAGggGGCGgCCGaGGGCCCCg -3' miRNA: 3'- gaCa--CCCUU--UUGCgGGCaCUCGGGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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