miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28795 3' -56.4 NC_006146.1 + 111998 1.11 0.002244
Target:  5'- uCGCCCUGCAGGUCGCGCCAAAAGUGGg -3'
miRNA:   3'- -GCGGGACGUCCAGCGCGGUUUUCACC- -5'
28795 3' -56.4 NC_006146.1 + 101451 0.82 0.170892
Target:  5'- aGCCgUGCAGGUgGCGC-AGAGGUGGg -3'
miRNA:   3'- gCGGgACGUCCAgCGCGgUUUUCACC- -5'
28795 3' -56.4 NC_006146.1 + 158119 0.75 0.454355
Target:  5'- cCGcCCCUGCAGGgcCGCGuCCAGguccggcaggucacAGGUGGg -3'
miRNA:   3'- -GC-GGGACGUCCa-GCGC-GGUU--------------UUCACC- -5'
28795 3' -56.4 NC_006146.1 + 111709 0.74 0.503788
Target:  5'- aGCCCUGCAGGauggaGCagGCCAccacaAAGGUGGc -3'
miRNA:   3'- gCGGGACGUCCag---CG--CGGU-----UUUCACC- -5'
28795 3' -56.4 NC_006146.1 + 45912 0.74 0.503788
Target:  5'- gCGCCCgGCcGGUgacCGUGCCGuAGGUGGa -3'
miRNA:   3'- -GCGGGaCGuCCA---GCGCGGUuUUCACC- -5'
28795 3' -56.4 NC_006146.1 + 51822 0.73 0.532784
Target:  5'- gGCCUccuCGGGaaGCGCCGGAGGUGGg -3'
miRNA:   3'- gCGGGac-GUCCagCGCGGUUUUCACC- -5'
28795 3' -56.4 NC_006146.1 + 77312 0.73 0.562356
Target:  5'- aGCCCgGCGGGUCGCGCaugccCAGGcugauGGUGa -3'
miRNA:   3'- gCGGGaCGUCCAGCGCG-----GUUU-----UCACc -5'
28795 3' -56.4 NC_006146.1 + 11358 0.72 0.592352
Target:  5'- gGCCUggcGCAGGcgcugCGCGUCAGgcAGGUGGg -3'
miRNA:   3'- gCGGGa--CGUCCa----GCGCGGUU--UUCACC- -5'
28795 3' -56.4 NC_006146.1 + 20730 0.71 0.67205
Target:  5'- gCGgCCUGCgAGGaccCGCGCCAAAAGaccauccUGGa -3'
miRNA:   3'- -GCgGGACG-UCCa--GCGCGGUUUUC-------ACC- -5'
28795 3' -56.4 NC_006146.1 + 149984 0.71 0.673054
Target:  5'- gGgCCUGCAGGUCG-GCCGGAcucAG-GGc -3'
miRNA:   3'- gCgGGACGUCCAGCgCGGUUU---UCaCC- -5'
28795 3' -56.4 NC_006146.1 + 26735 0.71 0.693064
Target:  5'- aGCCggGCAGGUUggGgGUUAAGAGUGGg -3'
miRNA:   3'- gCGGgaCGUCCAG--CgCGGUUUUCACC- -5'
28795 3' -56.4 NC_006146.1 + 71207 0.7 0.742067
Target:  5'- aGUCCaGCGGGgccguagCGUGCUAGAauuGGUGGg -3'
miRNA:   3'- gCGGGaCGUCCa------GCGCGGUUU---UCACC- -5'
28795 3' -56.4 NC_006146.1 + 99053 0.7 0.742067
Target:  5'- gGCCCgGCGGGUgucggcgGUGCCGuaguGGUGGa -3'
miRNA:   3'- gCGGGaCGUCCAg------CGCGGUuu--UCACC- -5'
28795 3' -56.4 NC_006146.1 + 138262 0.7 0.751623
Target:  5'- --aCCUGCAGGU-GUGuCCAcAGGUGGg -3'
miRNA:   3'- gcgGGACGUCCAgCGC-GGUuUUCACC- -5'
28795 3' -56.4 NC_006146.1 + 151704 0.7 0.751623
Target:  5'- gGCCCUG-AGG-CGCGCCugcguAGAAGUaGGc -3'
miRNA:   3'- gCGGGACgUCCaGCGCGG-----UUUUCA-CC- -5'
28795 3' -56.4 NC_006146.1 + 94552 0.69 0.761075
Target:  5'- gGUCUUGaGGGUgGCGUgGAGGGUGGu -3'
miRNA:   3'- gCGGGACgUCCAgCGCGgUUUUCACC- -5'
28795 3' -56.4 NC_006146.1 + 147574 0.69 0.769487
Target:  5'- uCGgUCUGCAGGgccauacUCGCGCUc-AGGUGGa -3'
miRNA:   3'- -GCgGGACGUCC-------AGCGCGGuuUUCACC- -5'
28795 3' -56.4 NC_006146.1 + 133417 0.69 0.787826
Target:  5'- uGUCCUGUguuuguuGGGUa--GCCAGGGGUGGa -3'
miRNA:   3'- gCGGGACG-------UCCAgcgCGGUUUUCACC- -5'
28795 3' -56.4 NC_006146.1 + 75824 0.69 0.788729
Target:  5'- gGCCCUGCGGGacaUGCaCCAGGGGagcucUGGa -3'
miRNA:   3'- gCGGGACGUCCa--GCGcGGUUUUC-----ACC- -5'
28795 3' -56.4 NC_006146.1 + 76886 0.69 0.788729
Target:  5'- uGcCCCUGcCGGGcCGCacgugggaGCCAGAGGUGa -3'
miRNA:   3'- gC-GGGAC-GUCCaGCG--------CGGUUUUCACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.