miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28795 3' -56.4 NC_006146.1 + 158119 0.75 0.454355
Target:  5'- cCGcCCCUGCAGGgcCGCGuCCAGguccggcaggucacAGGUGGg -3'
miRNA:   3'- -GC-GGGACGUCCa-GCGC-GGUU--------------UUCACC- -5'
28795 3' -56.4 NC_006146.1 + 34432 0.68 0.831961
Target:  5'- --aCCUGCAGGU-GUGUCAccAGGUGGg -3'
miRNA:   3'- gcgGGACGUCCAgCGCGGUu-UUCACC- -5'
28795 3' -56.4 NC_006146.1 + 130823 0.67 0.877938
Target:  5'- aCGCgCUGCAGGcccUC-CGCCGGGAGa-- -3'
miRNA:   3'- -GCGgGACGUCC---AGcGCGGUUUUCacc -5'
28795 3' -56.4 NC_006146.1 + 156579 0.65 0.925636
Target:  5'- gGCCCUgcgugaguucuccaGCAGGU-GCGCCAGcuccAGGgacaGGg -3'
miRNA:   3'- gCGGGA--------------CGUCCAgCGCGGUU----UUCa---CC- -5'
28795 3' -56.4 NC_006146.1 + 99053 0.7 0.742067
Target:  5'- gGCCCgGCGGGUgucggcgGUGCCGuaguGGUGGa -3'
miRNA:   3'- gCGGGaCGUCCAg------CGCGGUuu--UCACC- -5'
28795 3' -56.4 NC_006146.1 + 151704 0.7 0.751623
Target:  5'- gGCCCUG-AGG-CGCGCCugcguAGAAGUaGGc -3'
miRNA:   3'- gCGGGACgUCCaGCGCGG-----UUUUCA-CC- -5'
28795 3' -56.4 NC_006146.1 + 94552 0.69 0.761075
Target:  5'- gGUCUUGaGGGUgGCGUgGAGGGUGGu -3'
miRNA:   3'- gCGGGACgUCCAgCGCGgUUUUCACC- -5'
28795 3' -56.4 NC_006146.1 + 147574 0.69 0.769487
Target:  5'- uCGgUCUGCAGGgccauacUCGCGCUc-AGGUGGa -3'
miRNA:   3'- -GCgGGACGUCC-------AGCGCGGuuUUCACC- -5'
28795 3' -56.4 NC_006146.1 + 21197 0.69 0.797684
Target:  5'- gGCCCc-CAGGucUCGgGCCAGAgguaAGUGGa -3'
miRNA:   3'- gCGGGacGUCC--AGCgCGGUUU----UCACC- -5'
28795 3' -56.4 NC_006146.1 + 120209 0.68 0.823639
Target:  5'- aGgCCUGCcGGUCgGUGCCu---GUGGg -3'
miRNA:   3'- gCgGGACGuCCAG-CGCGGuuuuCACC- -5'
28795 3' -56.4 NC_006146.1 + 27353 0.69 0.797684
Target:  5'- gGCCCc-CAGGucUCGgGCCAGAgguaAGUGGa -3'
miRNA:   3'- gCGGGacGUCC--AGCgCGGUUU----UCACC- -5'
28795 3' -56.4 NC_006146.1 + 18119 0.69 0.797684
Target:  5'- gGCCCc-CAGGucUCGgGCCAGAgguaAGUGGa -3'
miRNA:   3'- gCGGGacGUCC--AGCgCGGUUU----UCACC- -5'
28795 3' -56.4 NC_006146.1 + 45912 0.74 0.503788
Target:  5'- gCGCCCgGCcGGUgacCGUGCCGuAGGUGGa -3'
miRNA:   3'- -GCGGGaCGuCCA---GCGCGGUuUUCACC- -5'
28795 3' -56.4 NC_006146.1 + 40996 0.69 0.801225
Target:  5'- gGCCCUGUcuGGUCagggcgaagagccggGCGUCAGAGccGUGGg -3'
miRNA:   3'- gCGGGACGu-CCAG---------------CGCGGUUUU--CACC- -5'
28795 3' -56.4 NC_006146.1 + 149984 0.71 0.673054
Target:  5'- gGgCCUGCAGGUCG-GCCGGAcucAG-GGc -3'
miRNA:   3'- gCgGGACGUCCAGCgCGGUUU---UCaCC- -5'
28795 3' -56.4 NC_006146.1 + 15041 0.69 0.797684
Target:  5'- gGCCCc-CAGGucUCGgGCCAGAgguaAGUGGa -3'
miRNA:   3'- gCGGGacGUCC--AGCgCGGUUU----UCACC- -5'
28795 3' -56.4 NC_006146.1 + 3398 0.68 0.806492
Target:  5'- gGCCCUGaag--CGUGCCuguGAAGUGGc -3'
miRNA:   3'- gCGGGACguccaGCGCGGu--UUUCACC- -5'
28795 3' -56.4 NC_006146.1 + 59555 0.67 0.855837
Target:  5'- uCGCCCUGaugcccaccuCGGGUUGCGCCc--AGUugacGGg -3'
miRNA:   3'- -GCGGGAC----------GUCCAGCGCGGuuuUCA----CC- -5'
28795 3' -56.4 NC_006146.1 + 71207 0.7 0.742067
Target:  5'- aGUCCaGCGGGgccguagCGUGCUAGAauuGGUGGg -3'
miRNA:   3'- gCGGGaCGUCCa------GCGCGGUUU---UCACC- -5'
28795 3' -56.4 NC_006146.1 + 138262 0.7 0.751623
Target:  5'- --aCCUGCAGGU-GUGuCCAcAGGUGGg -3'
miRNA:   3'- gcgGGACGUCCAgCGC-GGUuUUCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.