miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28795 3' -56.4 NC_006146.1 + 3398 0.68 0.806492
Target:  5'- gGCCCUGaag--CGUGCCuguGAAGUGGc -3'
miRNA:   3'- gCGGGACguccaGCGCGGu--UUUCACC- -5'
28795 3' -56.4 NC_006146.1 + 8521 0.69 0.797684
Target:  5'- gGuCCCgggcGCGGG-CGCGCCAAGGGg-- -3'
miRNA:   3'- gC-GGGa---CGUCCaGCGCGGUUUUCacc -5'
28795 3' -56.4 NC_006146.1 + 11358 0.72 0.592352
Target:  5'- gGCCUggcGCAGGcgcugCGCGUCAGgcAGGUGGg -3'
miRNA:   3'- gCGGGa--CGUCCa----GCGCGGUU--UUCACC- -5'
28795 3' -56.4 NC_006146.1 + 15041 0.69 0.797684
Target:  5'- gGCCCc-CAGGucUCGgGCCAGAgguaAGUGGa -3'
miRNA:   3'- gCGGGacGUCC--AGCgCGGUUU----UCACC- -5'
28795 3' -56.4 NC_006146.1 + 16700 0.66 0.921862
Target:  5'- aGCCagacGCAGGUCcacgaCGCCccGGGGUGGa -3'
miRNA:   3'- gCGGga--CGUCCAGc----GCGGu-UUUCACC- -5'
28795 3' -56.4 NC_006146.1 + 18119 0.69 0.797684
Target:  5'- gGCCCc-CAGGucUCGgGCCAGAgguaAGUGGa -3'
miRNA:   3'- gCGGGacGUCC--AGCgCGGUUU----UCACC- -5'
28795 3' -56.4 NC_006146.1 + 20730 0.71 0.67205
Target:  5'- gCGgCCUGCgAGGaccCGCGCCAAAAGaccauccUGGa -3'
miRNA:   3'- -GCgGGACG-UCCa--GCGCGGUUUUC-------ACC- -5'
28795 3' -56.4 NC_006146.1 + 21197 0.69 0.797684
Target:  5'- gGCCCc-CAGGucUCGgGCCAGAgguaAGUGGa -3'
miRNA:   3'- gCGGGacGUCC--AGCgCGGUUU----UCACC- -5'
28795 3' -56.4 NC_006146.1 + 23339 0.68 0.838492
Target:  5'- gGCCCUGCAGaccgaccucaGCGCCuggcgcGUGGa -3'
miRNA:   3'- gCGGGACGUCcag-------CGCGGuuuu--CACC- -5'
28795 3' -56.4 NC_006146.1 + 23471 0.66 0.921862
Target:  5'- gGCCCUGgccguggcCAGGUaCGgGCU---GGUGGg -3'
miRNA:   3'- gCGGGAC--------GUCCA-GCgCGGuuuUCACC- -5'
28795 3' -56.4 NC_006146.1 + 24275 0.69 0.797684
Target:  5'- gGCCCc-CAGGucUCGgGCCAGAgguaAGUGGa -3'
miRNA:   3'- gCGGGacGUCC--AGCgCGGUUU----UCACC- -5'
28795 3' -56.4 NC_006146.1 + 26735 0.71 0.693064
Target:  5'- aGCCggGCAGGUUggGgGUUAAGAGUGGg -3'
miRNA:   3'- gCGGgaCGUCCAG--CgCGGUUUUCACC- -5'
28795 3' -56.4 NC_006146.1 + 27333 0.67 0.877938
Target:  5'- gGCCCUccaaaaacaGCGGGUgGCGCgGcAAGgccgGGg -3'
miRNA:   3'- gCGGGA---------CGUCCAgCGCGgUuUUCa---CC- -5'
28795 3' -56.4 NC_006146.1 + 27353 0.69 0.797684
Target:  5'- gGCCCc-CAGGucUCGgGCCAGAgguaAGUGGa -3'
miRNA:   3'- gCGGGacGUCC--AGCgCGGUUU----UCACC- -5'
28795 3' -56.4 NC_006146.1 + 33089 0.67 0.884884
Target:  5'- gGCCCUGCGGcUCugggGCaGCCG--GGUGGc -3'
miRNA:   3'- gCGGGACGUCcAG----CG-CGGUuuUCACC- -5'
28795 3' -56.4 NC_006146.1 + 34432 0.68 0.831961
Target:  5'- --aCCUGCAGGU-GUGUCAccAGGUGGg -3'
miRNA:   3'- gcgGGACGUCCAgCGCGGUu-UUCACC- -5'
28795 3' -56.4 NC_006146.1 + 39059 0.66 0.916272
Target:  5'- gGCCCUGUgaauGGUCGCcgGCCuccGGUcuGGg -3'
miRNA:   3'- gCGGGACGu---CCAGCG--CGGuuuUCA--CC- -5'
28795 3' -56.4 NC_006146.1 + 40444 0.67 0.870778
Target:  5'- gGCCCcguagGCGGGU-GCGgCAAuggccuGGUGGg -3'
miRNA:   3'- gCGGGa----CGUCCAgCGCgGUUu-----UCACC- -5'
28795 3' -56.4 NC_006146.1 + 40996 0.69 0.801225
Target:  5'- gGCCCUGUcuGGUCagggcgaagagccggGCGUCAGAGccGUGGg -3'
miRNA:   3'- gCGGGACGu-CCAG---------------CGCGGUUUU--CACC- -5'
28795 3' -56.4 NC_006146.1 + 42318 0.67 0.884884
Target:  5'- uGCCCUGCgAGGUUGCugacugGCCcgGGAGGUc- -3'
miRNA:   3'- gCGGGACG-UCCAGCG------CGG--UUUUCAcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.