miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28795 3' -56.4 NC_006146.1 + 42353 0.67 0.855837
Target:  5'- uGCCgCUcCAGGaucuccCGCGCCGccAGGGUGGg -3'
miRNA:   3'- gCGG-GAcGUCCa-----GCGCGGU--UUUCACC- -5'
28795 3' -56.4 NC_006146.1 + 45912 0.74 0.503788
Target:  5'- gCGCCCgGCcGGUgacCGUGCCGuAGGUGGa -3'
miRNA:   3'- -GCGGGaCGuCCA---GCGCGGUuUUCACC- -5'
28795 3' -56.4 NC_006146.1 + 51822 0.73 0.532784
Target:  5'- gGCCUccuCGGGaaGCGCCGGAGGUGGg -3'
miRNA:   3'- gCGGGac-GUCCagCGCGGUUUUCACC- -5'
28795 3' -56.4 NC_006146.1 + 52430 0.67 0.891612
Target:  5'- gGCCuCUGCccuccaguuugGGGUCGaCGCCcugGAGAG-GGg -3'
miRNA:   3'- gCGG-GACG-----------UCCAGC-GCGG---UUUUCaCC- -5'
28795 3' -56.4 NC_006146.1 + 52469 0.66 0.898118
Target:  5'- cCGCCgUGCAGGaccUCG-GCCAGGGacUGGa -3'
miRNA:   3'- -GCGGgACGUCC---AGCgCGGUUUUc-ACC- -5'
28795 3' -56.4 NC_006146.1 + 59555 0.67 0.855837
Target:  5'- uCGCCCUGaugcccaccuCGGGUUGCGCCc--AGUugacGGg -3'
miRNA:   3'- -GCGGGAC----------GUCCAGCGCGGuuuUCA----CC- -5'
28795 3' -56.4 NC_006146.1 + 61781 0.66 0.910451
Target:  5'- uGCCCaagacgGCAGccUCGUuaCAGAAGUGGg -3'
miRNA:   3'- gCGGGa-----CGUCc-AGCGcgGUUUUCACC- -5'
28795 3' -56.4 NC_006146.1 + 69855 0.66 0.916272
Target:  5'- gGCCCUgGgAGGUCGgGCguAGAGg-- -3'
miRNA:   3'- gCGGGA-CgUCCAGCgCGguUUUCacc -5'
28795 3' -56.4 NC_006146.1 + 71207 0.7 0.742067
Target:  5'- aGUCCaGCGGGgccguagCGUGCUAGAauuGGUGGg -3'
miRNA:   3'- gCGGGaCGUCCa------GCGCGGUUU---UCACC- -5'
28795 3' -56.4 NC_006146.1 + 71754 0.66 0.916272
Target:  5'- cCGCcaCCUGCcGGUCGCuggaGCCccu-GUGGa -3'
miRNA:   3'- -GCG--GGACGuCCAGCG----CGGuuuuCACC- -5'
28795 3' -56.4 NC_006146.1 + 75824 0.69 0.788729
Target:  5'- gGCCCUGCGGGacaUGCaCCAGGGGagcucUGGa -3'
miRNA:   3'- gCGGGACGUCCa--GCGcGGUUUUC-----ACC- -5'
28795 3' -56.4 NC_006146.1 + 76886 0.69 0.788729
Target:  5'- uGcCCCUGcCGGGcCGCacgugggaGCCAGAGGUGa -3'
miRNA:   3'- gC-GGGAC-GUCCaGCG--------CGGUUUUCACc -5'
28795 3' -56.4 NC_006146.1 + 77312 0.73 0.562356
Target:  5'- aGCCCgGCGGGUCGCGCaugccCAGGcugauGGUGa -3'
miRNA:   3'- gCGGGaCGUCCAGCGCG-----GUUU-----UCACc -5'
28795 3' -56.4 NC_006146.1 + 84524 0.66 0.910451
Target:  5'- aCGUCgUGCcGGUacagGCGCCGuggcAGGUGGu -3'
miRNA:   3'- -GCGGgACGuCCAg---CGCGGUu---UUCACC- -5'
28795 3' -56.4 NC_006146.1 + 94552 0.69 0.761075
Target:  5'- gGUCUUGaGGGUgGCGUgGAGGGUGGu -3'
miRNA:   3'- gCGGGACgUCCAgCGCGgUUUUCACC- -5'
28795 3' -56.4 NC_006146.1 + 99053 0.7 0.742067
Target:  5'- gGCCCgGCGGGUgucggcgGUGCCGuaguGGUGGa -3'
miRNA:   3'- gCGGGaCGUCCAg------CGCGGUuu--UCACC- -5'
28795 3' -56.4 NC_006146.1 + 101451 0.82 0.170892
Target:  5'- aGCCgUGCAGGUgGCGC-AGAGGUGGg -3'
miRNA:   3'- gCGGgACGUCCAgCGCGgUUUUCACC- -5'
28795 3' -56.4 NC_006146.1 + 101668 0.67 0.856603
Target:  5'- gGCCCUGgGGGgaaacgggcuacgggCgGCGCUAGAGGgggGGa -3'
miRNA:   3'- gCGGGACgUCCa--------------G-CGCGGUUUUCa--CC- -5'
28795 3' -56.4 NC_006146.1 + 102832 0.67 0.870778
Target:  5'- gGCUCUGCGcuuGcUCGCGCCGcucGUGGa -3'
miRNA:   3'- gCGGGACGU---CcAGCGCGGUuuuCACC- -5'
28795 3' -56.4 NC_006146.1 + 111709 0.74 0.503788
Target:  5'- aGCCCUGCAGGauggaGCagGCCAccacaAAGGUGGc -3'
miRNA:   3'- gCGGGACGUCCag---CG--CGGU-----UUUCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.