Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28795 | 3' | -56.4 | NC_006146.1 | + | 167310 | 0.66 | 0.910451 |
Target: 5'- gGCgCCUGCAGGggGgGCCGGcGG-GGc -3' miRNA: 3'- gCG-GGACGUCCagCgCGGUUuUCaCC- -5' |
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28795 | 3' | -56.4 | NC_006146.1 | + | 167635 | 0.66 | 0.904399 |
Target: 5'- gGUCCcGCGGGgcccggcgCGUGCCGGGGGcccgGGg -3' miRNA: 3'- gCGGGaCGUCCa-------GCGCGGUUUUCa---CC- -5' |
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28795 | 3' | -56.4 | NC_006146.1 | + | 128642 | 0.67 | 0.884884 |
Target: 5'- uCGCCCaGCuGaGccagcuccUCGCGCCGGAGG-GGg -3' miRNA: 3'- -GCGGGaCGuC-C--------AGCGCGGUUUUCaCC- -5' |
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28795 | 3' | -56.4 | NC_006146.1 | + | 130823 | 0.67 | 0.877938 |
Target: 5'- aCGCgCUGCAGGcccUC-CGCCGGGAGa-- -3' miRNA: 3'- -GCGgGACGUCC---AGcGCGGUUUUCacc -5' |
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28795 | 3' | -56.4 | NC_006146.1 | + | 69855 | 0.66 | 0.916272 |
Target: 5'- gGCCCUgGgAGGUCGgGCguAGAGg-- -3' miRNA: 3'- gCGGGA-CgUCCAGCgCGguUUUCacc -5' |
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28795 | 3' | -56.4 | NC_006146.1 | + | 52469 | 0.66 | 0.898118 |
Target: 5'- cCGCCgUGCAGGaccUCG-GCCAGGGacUGGa -3' miRNA: 3'- -GCGGgACGUCC---AGCgCGGUUUUc-ACC- -5' |
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28795 | 3' | -56.4 | NC_006146.1 | + | 59555 | 0.67 | 0.855837 |
Target: 5'- uCGCCCUGaugcccaccuCGGGUUGCGCCc--AGUugacGGg -3' miRNA: 3'- -GCGGGAC----------GUCCAGCGCGGuuuUCA----CC- -5' |
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28795 | 3' | -56.4 | NC_006146.1 | + | 39059 | 0.66 | 0.916272 |
Target: 5'- gGCCCUGUgaauGGUCGCcgGCCuccGGUcuGGg -3' miRNA: 3'- gCGGGACGu---CCAGCG--CGGuuuUCA--CC- -5' |
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28795 | 3' | -56.4 | NC_006146.1 | + | 34432 | 0.68 | 0.831961 |
Target: 5'- --aCCUGCAGGU-GUGUCAccAGGUGGg -3' miRNA: 3'- gcgGGACGUCCAgCGCGGUu-UUCACC- -5' |
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28795 | 3' | -56.4 | NC_006146.1 | + | 169174 | 0.66 | 0.910451 |
Target: 5'- gGCgCCUGCAGGggGgGCCGGcGG-GGc -3' miRNA: 3'- gCG-GGACGUCCagCgCGGUUuUCaCC- -5' |
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28795 | 3' | -56.4 | NC_006146.1 | + | 159957 | 0.66 | 0.921862 |
Target: 5'- aCGuCCCUGUgguaggAGGUgGCGCgCAGGAGcccgcaguUGGg -3' miRNA: 3'- -GC-GGGACG------UCCAgCGCG-GUUUUC--------ACC- -5' |
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28795 | 3' | -56.4 | NC_006146.1 | + | 149939 | 0.67 | 0.890949 |
Target: 5'- uGCCCUcgGGGUUgaggggcgcccagGCGUUggGAGUGGg -3' miRNA: 3'- gCGGGAcgUCCAG-------------CGCGGuuUUCACC- -5' |
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28795 | 3' | -56.4 | NC_006146.1 | + | 166541 | 0.67 | 0.887602 |
Target: 5'- gGUCCUugGCAGGUUgguaggggucuucagGCaGCCGAAAGUGu -3' miRNA: 3'- gCGGGA--CGUCCAG---------------CG-CGGUUUUCACc -5' |
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28795 | 3' | -56.4 | NC_006146.1 | + | 33089 | 0.67 | 0.884884 |
Target: 5'- gGCCCUGCGGcUCugggGCaGCCG--GGUGGc -3' miRNA: 3'- gCGGGACGUCcAG----CG-CGGUuuUCACC- -5' |
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28795 | 3' | -56.4 | NC_006146.1 | + | 42318 | 0.67 | 0.884884 |
Target: 5'- uGCCCUGCgAGGUUGCugacugGCCcgGGAGGUc- -3' miRNA: 3'- gCGGGACG-UCCAGCG------CGG--UUUUCAcc -5' |
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28795 | 3' | -56.4 | NC_006146.1 | + | 120209 | 0.68 | 0.823639 |
Target: 5'- aGgCCUGCcGGUCgGUGCCu---GUGGg -3' miRNA: 3'- gCgGGACGuCCAG-CGCGGuuuuCACC- -5' |
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28795 | 3' | -56.4 | NC_006146.1 | + | 27333 | 0.67 | 0.877938 |
Target: 5'- gGCCCUccaaaaacaGCGGGUgGCGCgGcAAGgccgGGg -3' miRNA: 3'- gCGGGA---------CGUCCAgCGCGgUuUUCa---CC- -5' |
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28795 | 3' | -56.4 | NC_006146.1 | + | 111998 | 1.11 | 0.002244 |
Target: 5'- uCGCCCUGCAGGUCGCGCCAAAAGUGGg -3' miRNA: 3'- -GCGGGACGUCCAGCGCGGUUUUCACC- -5' |
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28795 | 3' | -56.4 | NC_006146.1 | + | 76886 | 0.69 | 0.788729 |
Target: 5'- uGcCCCUGcCGGGcCGCacgugggaGCCAGAGGUGa -3' miRNA: 3'- gC-GGGAC-GUCCaGCG--------CGGUUUUCACc -5' |
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28795 | 3' | -56.4 | NC_006146.1 | + | 8521 | 0.69 | 0.797684 |
Target: 5'- gGuCCCgggcGCGGG-CGCGCCAAGGGg-- -3' miRNA: 3'- gC-GGGa---CGUCCaGCGCGGUUUUCacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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