miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28795 3' -56.4 NC_006146.1 + 33089 0.67 0.884884
Target:  5'- gGCCCUGCGGcUCugggGCaGCCG--GGUGGc -3'
miRNA:   3'- gCGGGACGUCcAG----CG-CGGUuuUCACC- -5'
28795 3' -56.4 NC_006146.1 + 134719 0.67 0.882823
Target:  5'- aCGUCCUGCAGGaugcaUGCaccaggccagccagGCCAAcgcucgucccaGAGUGGg -3'
miRNA:   3'- -GCGGGACGUCCa----GCG--------------CGGUU-----------UUCACC- -5'
28795 3' -56.4 NC_006146.1 + 130823 0.67 0.877938
Target:  5'- aCGCgCUGCAGGcccUC-CGCCGGGAGa-- -3'
miRNA:   3'- -GCGgGACGUCC---AGcGCGGUUUUCacc -5'
28795 3' -56.4 NC_006146.1 + 27333 0.67 0.877938
Target:  5'- gGCCCUccaaaaacaGCGGGUgGCGCgGcAAGgccgGGg -3'
miRNA:   3'- gCGGGA---------CGUCCAgCGCGgUuUUCa---CC- -5'
28795 3' -56.4 NC_006146.1 + 102832 0.67 0.870778
Target:  5'- gGCUCUGCGcuuGcUCGCGCCGcucGUGGa -3'
miRNA:   3'- gCGGGACGU---CcAGCGCGGUuuuCACC- -5'
28795 3' -56.4 NC_006146.1 + 40444 0.67 0.870778
Target:  5'- gGCCCcguagGCGGGU-GCGgCAAuggccuGGUGGg -3'
miRNA:   3'- gCGGGa----CGUCCAgCGCgGUUu-----UCACC- -5'
28795 3' -56.4 NC_006146.1 + 101668 0.67 0.856603
Target:  5'- gGCCCUGgGGGgaaacgggcuacgggCgGCGCUAGAGGgggGGa -3'
miRNA:   3'- gCGGGACgUCCa--------------G-CGCGGUUUUCa--CC- -5'
28795 3' -56.4 NC_006146.1 + 59555 0.67 0.855837
Target:  5'- uCGCCCUGaugcccaccuCGGGUUGCGCCc--AGUugacGGg -3'
miRNA:   3'- -GCGGGAC----------GUCCAGCGCGGuuuUCA----CC- -5'
28795 3' -56.4 NC_006146.1 + 42353 0.67 0.855837
Target:  5'- uGCCgCUcCAGGaucuccCGCGCCGccAGGGUGGg -3'
miRNA:   3'- gCGG-GAcGUCCa-----GCGCGGU--UUUCACC- -5'
28795 3' -56.4 NC_006146.1 + 23339 0.68 0.838492
Target:  5'- gGCCCUGCAGaccgaccucaGCGCCuggcgcGUGGa -3'
miRNA:   3'- gCGGGACGUCcag-------CGCGGuuuu--CACC- -5'
28795 3' -56.4 NC_006146.1 + 34432 0.68 0.831961
Target:  5'- --aCCUGCAGGU-GUGUCAccAGGUGGg -3'
miRNA:   3'- gcgGGACGUCCAgCGCGGUu-UUCACC- -5'
28795 3' -56.4 NC_006146.1 + 120209 0.68 0.823639
Target:  5'- aGgCCUGCcGGUCgGUGCCu---GUGGg -3'
miRNA:   3'- gCgGGACGuCCAG-CGCGGuuuuCACC- -5'
28795 3' -56.4 NC_006146.1 + 127577 0.68 0.815147
Target:  5'- gGCCCUGggcggccgAGGcCGCGCCGGccGGGUGa -3'
miRNA:   3'- gCGGGACg-------UCCaGCGCGGUU--UUCACc -5'
28795 3' -56.4 NC_006146.1 + 3398 0.68 0.806492
Target:  5'- gGCCCUGaag--CGUGCCuguGAAGUGGc -3'
miRNA:   3'- gCGGGACguccaGCGCGGu--UUUCACC- -5'
28795 3' -56.4 NC_006146.1 + 40996 0.69 0.801225
Target:  5'- gGCCCUGUcuGGUCagggcgaagagccggGCGUCAGAGccGUGGg -3'
miRNA:   3'- gCGGGACGu-CCAG---------------CGCGGUUUU--CACC- -5'
28795 3' -56.4 NC_006146.1 + 27353 0.69 0.797684
Target:  5'- gGCCCc-CAGGucUCGgGCCAGAgguaAGUGGa -3'
miRNA:   3'- gCGGGacGUCC--AGCgCGGUUU----UCACC- -5'
28795 3' -56.4 NC_006146.1 + 24275 0.69 0.797684
Target:  5'- gGCCCc-CAGGucUCGgGCCAGAgguaAGUGGa -3'
miRNA:   3'- gCGGGacGUCC--AGCgCGGUUU----UCACC- -5'
28795 3' -56.4 NC_006146.1 + 21197 0.69 0.797684
Target:  5'- gGCCCc-CAGGucUCGgGCCAGAgguaAGUGGa -3'
miRNA:   3'- gCGGGacGUCC--AGCgCGGUUU----UCACC- -5'
28795 3' -56.4 NC_006146.1 + 15041 0.69 0.797684
Target:  5'- gGCCCc-CAGGucUCGgGCCAGAgguaAGUGGa -3'
miRNA:   3'- gCGGGacGUCC--AGCgCGGUUU----UCACC- -5'
28795 3' -56.4 NC_006146.1 + 8521 0.69 0.797684
Target:  5'- gGuCCCgggcGCGGG-CGCGCCAAGGGg-- -3'
miRNA:   3'- gC-GGGa---CGUCCaGCGCGGUUUUCacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.