miRNA display CGI


Results 41 - 60 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28795 5' -56.1 NC_006146.1 + 49509 0.71 0.696413
Target:  5'- uGGCaUCUggaUCGGCGGG-UGAuccGGGGGCu -3'
miRNA:   3'- -CCGgAGGa--AGUCGUCCuACU---UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 170498 0.71 0.700411
Target:  5'- gGGCUUCCccggaCccccagcgcgcggcgGGCGGGGccUGAGGGGGCg -3'
miRNA:   3'- -CCGGAGGaa---G---------------UCGUCCU--ACUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 123309 0.7 0.720257
Target:  5'- gGGUCUCCcUCAucacggugugcagcuGCuGGAaGAGGGGGUg -3'
miRNA:   3'- -CCGGAGGaAGU---------------CGuCCUaCUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 42524 0.7 0.722227
Target:  5'- cGGCUacugCCUgaacuuugggaagCAGacggGGGGUGggGGGGCg -3'
miRNA:   3'- -CCGGa---GGAa------------GUCg---UCCUACuuCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 43973 0.7 0.726156
Target:  5'- cGCCaUCCUgcCAGCGGGA--GAGGaGGCu -3'
miRNA:   3'- cCGG-AGGAa-GUCGUCCUacUUCC-CCG- -5'
28795 5' -56.1 NC_006146.1 + 4663 0.7 0.726156
Target:  5'- cGCCgUCCUgggcCGGguGGgcGAggcGGGGGCa -3'
miRNA:   3'- cCGG-AGGAa---GUCguCCuaCU---UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 14843 0.7 0.735922
Target:  5'- gGGCCcggggCCg-CGGgAGGccGAGGGGGCa -3'
miRNA:   3'- -CCGGa----GGaaGUCgUCCuaCUUCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 162669 0.7 0.735922
Target:  5'- aGGCagUgCUUCAcgGGGAUGAguAGGGGCa -3'
miRNA:   3'- -CCGg-AgGAAGUcgUCCUACU--UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 157255 0.7 0.743672
Target:  5'- uGGCCgcugccugugUCCggcgcuugaucgUCAGCcccAGGGUGggGGuGGCa -3'
miRNA:   3'- -CCGG----------AGGa-----------AGUCG---UCCUACuuCC-CCG- -5'
28795 5' -56.1 NC_006146.1 + 14092 0.7 0.745599
Target:  5'- aGGUCUagagUCcccagGGCGGGAUGucGGGGCu -3'
miRNA:   3'- -CCGGAgga-AG-----UCGUCCUACuuCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 66 0.7 0.745599
Target:  5'- gGGCUUCg-UCAcGCaAGGGUGAuuucggggAGGGGCu -3'
miRNA:   3'- -CCGGAGgaAGU-CG-UCCUACU--------UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 1930 0.7 0.745599
Target:  5'- gGGCUUCg-UCAcGCaAGGGUGAuuucggagAGGGGCu -3'
miRNA:   3'- -CCGGAGgaAGU-CG-UCCUACU--------UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 130 0.7 0.745599
Target:  5'- gGGCUUCg-UCAcGCaAGGGUGAuuucggagAGGGGCu -3'
miRNA:   3'- -CCGGAGgaAGU-CG-UCCUACU--------UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 1061 0.7 0.745599
Target:  5'- gGGCUUCg-UCAcGCaAGGGUGAuuuaggagAGGGGCu -3'
miRNA:   3'- -CCGGAGgaAGU-CG-UCCUACU--------UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 997 0.7 0.745599
Target:  5'- gGGCUUCg-UCAcGCaAGGGUGAuuucggagAGGGGCu -3'
miRNA:   3'- -CCGGAGgaAGU-CG-UCCUACU--------UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 2 0.7 0.745599
Target:  5'- gGGCUUCg-UCAcGCaAGGGUGAuuucggagAGGGGCu -3'
miRNA:   3'- -CCGGAGgaAGU-CG-UCCUACU--------UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 2862 0.7 0.745599
Target:  5'- gGGCUUCg-UCAcGCaAGGGUGAuuucggagAGGGGCu -3'
miRNA:   3'- -CCGGAGgaAGU-CG-UCCUACU--------UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 2926 0.7 0.745599
Target:  5'- gGGCUUCg-UCAcGCaAGGGUGAuuuaggagAGGGGCu -3'
miRNA:   3'- -CCGGAGgaAGU-CG-UCCUACU--------UCCCCG- -5'
28795 5' -56.1 NC_006146.1 + 54209 0.7 0.755178
Target:  5'- cGGUCUCCgcaUCGuaCAGGAUGggGcGGGa -3'
miRNA:   3'- -CCGGAGGa--AGUc-GUCCUACuuC-CCCg -5'
28795 5' -56.1 NC_006146.1 + 35985 0.7 0.755178
Target:  5'- gGGCC-CaaugUCAGCGGGAuaccUGggGaGGGUu -3'
miRNA:   3'- -CCGGaGga--AGUCGUCCU----ACuuC-CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.