miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28800 5' -50.2 NC_006146.1 + 107497 1.12 0.007835
Target:  5'- gCCGCCACUGCGCUAAAGUAGUAGACAa -3'
miRNA:   3'- -GGCGGUGACGCGAUUUCAUCAUCUGU- -5'
28800 5' -50.2 NC_006146.1 + 166366 0.74 0.829001
Target:  5'- -aGCCGCUGUGggAAAGUAGaaUAGGCGg -3'
miRNA:   3'- ggCGGUGACGCgaUUUCAUC--AUCUGU- -5'
28800 5' -50.2 NC_006146.1 + 108547 0.74 0.846
Target:  5'- uCCGgCGCgGCGUUGGAGUGGcUGGGCu -3'
miRNA:   3'- -GGCgGUGaCGCGAUUUCAUC-AUCUGu -5'
28800 5' -50.2 NC_006146.1 + 94949 0.73 0.884737
Target:  5'- -gGCCGCUGCGgUAGAGgggGGUGuGCAg -3'
miRNA:   3'- ggCGGUGACGCgAUUUCa--UCAUcUGU- -5'
28800 5' -50.2 NC_006146.1 + 94087 0.72 0.898595
Target:  5'- gCCGCCG-UG-GCUGAAGgcGUAGACc -3'
miRNA:   3'- -GGCGGUgACgCGAUUUCauCAUCUGu -5'
28800 5' -50.2 NC_006146.1 + 18851 0.7 0.96413
Target:  5'- aCC-CCGg-GCGCUGccgGGGUGGUGGACGu -3'
miRNA:   3'- -GGcGGUgaCGCGAU---UUCAUCAUCUGU- -5'
28800 5' -50.2 NC_006146.1 + 53739 0.7 0.967453
Target:  5'- gCCGCgGCUGCGCc-GGGgcGaAGACGg -3'
miRNA:   3'- -GGCGgUGACGCGauUUCauCaUCUGU- -5'
28800 5' -50.2 NC_006146.1 + 26540 0.7 0.967453
Target:  5'- -aGCCACaGCGUUAGccUGGUGGGCGu -3'
miRNA:   3'- ggCGGUGaCGCGAUUucAUCAUCUGU- -5'
28800 5' -50.2 NC_006146.1 + 68263 0.69 0.973435
Target:  5'- cCCGCCAC-GCGgUGGAGgGGcgGGGCGu -3'
miRNA:   3'- -GGCGGUGaCGCgAUUUCaUCa-UCUGU- -5'
28800 5' -50.2 NC_006146.1 + 48317 0.69 0.973435
Target:  5'- aCCGUCGgagGUGCUGGcGGUGGUGGGCc -3'
miRNA:   3'- -GGCGGUga-CGCGAUU-UCAUCAUCUGu -5'
28800 5' -50.2 NC_006146.1 + 147558 0.69 0.978576
Target:  5'- gCGCCAg-GCGCUGAGGUcGGUcuGCAg -3'
miRNA:   3'- gGCGGUgaCGCGAUUUCA-UCAucUGU- -5'
28800 5' -50.2 NC_006146.1 + 399 0.68 0.984854
Target:  5'- cCCGCCGC-GCGCUGGGGguccggGGAa- -3'
miRNA:   3'- -GGCGGUGaCGCGAUUUCauca--UCUgu -5'
28800 5' -50.2 NC_006146.1 + 32127 0.68 0.986599
Target:  5'- gUGCCACgucaccccgggGUGCUGGGGUGGgGGAUg -3'
miRNA:   3'- gGCGGUGa----------CGCGAUUUCAUCaUCUGu -5'
28800 5' -50.2 NC_006146.1 + 135957 0.68 0.986599
Target:  5'- gUGCCACgucaccccgggGUGCUGGGGUGGgGGAUg -3'
miRNA:   3'- gGCGGUGa----------CGCGAUUUCAUCaUCUGu -5'
28800 5' -50.2 NC_006146.1 + 143497 0.68 0.986599
Target:  5'- gUGCCugGgUGUGgUGGAGUGGUGGGCu -3'
miRNA:   3'- gGCGG--UgACGCgAUUUCAUCAUCUGu -5'
28800 5' -50.2 NC_006146.1 + 146575 0.68 0.986599
Target:  5'- gUGCCugGgUGUGgUGGAGUGGUGGGCu -3'
miRNA:   3'- gGCGG--UgACGCgAUUUCAUCAUCUGu -5'
28800 5' -50.2 NC_006146.1 + 152730 0.68 0.986599
Target:  5'- gUGCCugGgUGUGgUGGAGUGGUGGGCu -3'
miRNA:   3'- gGCGG--UgACGCgAUUUCAUCAUCUGu -5'
28800 5' -50.2 NC_006146.1 + 155808 0.68 0.986599
Target:  5'- gUGCCugGgUGUGgUGGAGUGGUGGGCu -3'
miRNA:   3'- gGCGG--UgACGCgAUUUCAUCAUCUGu -5'
28800 5' -50.2 NC_006146.1 + 33578 0.68 0.986599
Target:  5'- gUCGCCGCguuCGCUGGuccGGUuugGGUGGGCGu -3'
miRNA:   3'- -GGCGGUGac-GCGAUU---UCA---UCAUCUGU- -5'
28800 5' -50.2 NC_006146.1 + 149653 0.68 0.986599
Target:  5'- gUGCCugGgUGUGgUGGAGUGGUGGGCu -3'
miRNA:   3'- gGCGG--UgACGCgAUUUCAUCAUCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.