Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28800 | 5' | -50.2 | NC_006146.1 | + | 94949 | 0.73 | 0.884737 |
Target: 5'- -gGCCGCUGCGgUAGAGgggGGUGuGCAg -3' miRNA: 3'- ggCGGUGACGCgAUUUCa--UCAUcUGU- -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 56323 | 0.66 | 0.996661 |
Target: 5'- gCCGUaGCUGCGCcgcgagaagGAggccgcccggagcaGGUAGUAGGCGu -3' miRNA: 3'- -GGCGgUGACGCGa--------UU--------------UCAUCAUCUGU- -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 120481 | 0.67 | 0.992085 |
Target: 5'- aCGUCGCUGCGCUGcuuccugcccGUGG-AGGCu -3' miRNA: 3'- gGCGGUGACGCGAUuu--------CAUCaUCUGu -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 71163 | 0.68 | 0.989623 |
Target: 5'- aCCGgCACUGUGgCUuGGGUGGUGGu-- -3' miRNA: 3'- -GGCgGUGACGC-GAuUUCAUCAUCugu -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 147558 | 0.69 | 0.978576 |
Target: 5'- gCGCCAg-GCGCUGAGGUcGGUcuGCAg -3' miRNA: 3'- gGCGGUgaCGCGAUUUCA-UCAucUGU- -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 68263 | 0.69 | 0.973435 |
Target: 5'- cCCGCCAC-GCGgUGGAGgGGcgGGGCGu -3' miRNA: 3'- -GGCGGUGaCGCgAUUUCaUCa-UCUGU- -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 98771 | 0.66 | 0.997741 |
Target: 5'- aCGCCuuucaggaaUGC-CUAGAG-AGUAGACAc -3' miRNA: 3'- gGCGGug-------ACGcGAUUUCaUCAUCUGU- -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 4661 | 0.66 | 0.996822 |
Target: 5'- cCCGCCGucCUGgGCc-GGGUGGgcgAGGCGg -3' miRNA: 3'- -GGCGGU--GACgCGauUUCAUCa--UCUGU- -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 71840 | 0.67 | 0.995188 |
Target: 5'- gCCGgagaCCACUGUGggGgugaggugucguuagGGGUGGUGGACAc -3' miRNA: 3'- -GGC----GGUGACGCgaU---------------UUCAUCAUCUGU- -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 33578 | 0.68 | 0.986599 |
Target: 5'- gUCGCCGCguuCGCUGGuccGGUuugGGUGGGCGu -3' miRNA: 3'- -GGCGGUGac-GCGAUU---UCA---UCAUCUGU- -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 94087 | 0.72 | 0.898595 |
Target: 5'- gCCGCCG-UG-GCUGAAGgcGUAGACc -3' miRNA: 3'- -GGCGGUgACgCGAUUUCauCAUCUGu -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 55366 | 0.66 | 0.996822 |
Target: 5'- cCCGCCACcGCGCgcGGGacgcccgGGGCAc -3' miRNA: 3'- -GGCGGUGaCGCGauUUCauca---UCUGU- -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 53739 | 0.7 | 0.967453 |
Target: 5'- gCCGCgGCUGCGCc-GGGgcGaAGACGg -3' miRNA: 3'- -GGCGgUGACGCGauUUCauCaUCUGU- -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 125990 | 0.67 | 0.994885 |
Target: 5'- cUCGCgGCUGCGaggcuugGGAGUGG-GGGCGg -3' miRNA: 3'- -GGCGgUGACGCga-----UUUCAUCaUCUGU- -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 149116 | 0.66 | 0.997314 |
Target: 5'- cCCGgcaucCCGCUGgGCuUAGAaUGGUGGGCGg -3' miRNA: 3'- -GGC-----GGUGACgCG-AUUUcAUCAUCUGU- -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 48317 | 0.69 | 0.973435 |
Target: 5'- aCCGUCGgagGUGCUGGcGGUGGUGGGCc -3' miRNA: 3'- -GGCGGUga-CGCGAUU-UCAUCAUCUGu -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 166366 | 0.74 | 0.829001 |
Target: 5'- -aGCCGCUGUGggAAAGUAGaaUAGGCGg -3' miRNA: 3'- ggCGGUGACGCgaUUUCAUC--AUCUGU- -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 32127 | 0.68 | 0.986599 |
Target: 5'- gUGCCACgucaccccgggGUGCUGGGGUGGgGGAUg -3' miRNA: 3'- gGCGGUGa----------CGCGAUUUCAUCaUCUGu -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 135957 | 0.68 | 0.986599 |
Target: 5'- gUGCCACgucaccccgggGUGCUGGGGUGGgGGAUg -3' miRNA: 3'- gGCGGUGa----------CGCGAUUUCAUCaUCUGu -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 143497 | 0.68 | 0.986599 |
Target: 5'- gUGCCugGgUGUGgUGGAGUGGUGGGCu -3' miRNA: 3'- gGCGG--UgACGCgAUUUCAUCAUCUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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