Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28800 | 5' | -50.2 | NC_006146.1 | + | 399 | 0.68 | 0.984854 |
Target: 5'- cCCGCCGC-GCGCUGGGGguccggGGAa- -3' miRNA: 3'- -GGCGGUGaCGCGAUUUCauca--UCUgu -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 4661 | 0.66 | 0.996822 |
Target: 5'- cCCGCCGucCUGgGCc-GGGUGGgcgAGGCGg -3' miRNA: 3'- -GGCGGU--GACgCGauUUCAUCa--UCUGU- -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 11364 | 0.68 | 0.988186 |
Target: 5'- gCGCaggCGCUGCGCgucAGgcaGGUGGGCAa -3' miRNA: 3'- gGCG---GUGACGCGauuUCa--UCAUCUGU- -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 18851 | 0.7 | 0.96413 |
Target: 5'- aCC-CCGg-GCGCUGccgGGGUGGUGGACGu -3' miRNA: 3'- -GGcGGUgaCGCGAU---UUCAUCAUCUGU- -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 25387 | 0.67 | 0.993128 |
Target: 5'- uCCGCCGCggcaaGgGCUAcgucaGAGUcuccGUGGACAc -3' miRNA: 3'- -GGCGGUGa----CgCGAU-----UUCAu---CAUCUGU- -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 26540 | 0.7 | 0.967453 |
Target: 5'- -aGCCACaGCGUUAGccUGGUGGGCGu -3' miRNA: 3'- ggCGGUGaCGCGAUUucAUCAUCUGU- -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 32127 | 0.68 | 0.986599 |
Target: 5'- gUGCCACgucaccccgggGUGCUGGGGUGGgGGAUg -3' miRNA: 3'- gGCGGUGa----------CGCGAUUUCAUCaUCUGu -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 33578 | 0.68 | 0.986599 |
Target: 5'- gUCGCCGCguuCGCUGGuccGGUuugGGUGGGCGu -3' miRNA: 3'- -GGCGGUGac-GCGAUU---UCA---UCAUCUGU- -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 40384 | 0.66 | 0.996259 |
Target: 5'- gUCGCCGCccgGCGCgu-AGUAGccucccgcggGGGCAa -3' miRNA: 3'- -GGCGGUGa--CGCGauuUCAUCa---------UCUGU- -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 42635 | 0.68 | 0.988186 |
Target: 5'- gCCGCCGCcgUGgGCcucacGUAGUGGGCc -3' miRNA: 3'- -GGCGGUG--ACgCGauuu-CAUCAUCUGu -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 48317 | 0.69 | 0.973435 |
Target: 5'- aCCGUCGgagGUGCUGGcGGUGGUGGGCc -3' miRNA: 3'- -GGCGGUga-CGCGAUU-UCAUCAUCUGu -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 53739 | 0.7 | 0.967453 |
Target: 5'- gCCGCgGCUGCGCc-GGGgcGaAGACGg -3' miRNA: 3'- -GGCGgUGACGCGauUUCauCaUCUGU- -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 55366 | 0.66 | 0.996822 |
Target: 5'- cCCGCCACcGCGCgcGGGacgcccgGGGCAc -3' miRNA: 3'- -GGCGGUGaCGCGauUUCauca---UCUGU- -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 56323 | 0.66 | 0.996661 |
Target: 5'- gCCGUaGCUGCGCcgcgagaagGAggccgcccggagcaGGUAGUAGGCGu -3' miRNA: 3'- -GGCGgUGACGCGa--------UU--------------UCAUCAUCUGU- -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 56460 | 0.66 | 0.996822 |
Target: 5'- aCGCCACcauuaaGCUAGAGUccaaugacGUGGACAu -3' miRNA: 3'- gGCGGUGacg---CGAUUUCAu-------CAUCUGU- -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 68263 | 0.69 | 0.973435 |
Target: 5'- cCCGCCAC-GCGgUGGAGgGGcgGGGCGu -3' miRNA: 3'- -GGCGGUGaCGCgAUUUCaUCa-UCUGU- -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 71163 | 0.68 | 0.989623 |
Target: 5'- aCCGgCACUGUGgCUuGGGUGGUGGu-- -3' miRNA: 3'- -GGCgGUGACGC-GAuUUCAUCAUCugu -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 71753 | 0.66 | 0.997314 |
Target: 5'- uCCGCCAcCUGCcggucGCUGGAGccccuGUGGAg- -3' miRNA: 3'- -GGCGGU-GACG-----CGAUUUCau---CAUCUgu -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 71840 | 0.67 | 0.995188 |
Target: 5'- gCCGgagaCCACUGUGggGgugaggugucguuagGGGUGGUGGACAc -3' miRNA: 3'- -GGC----GGUGACGCgaU---------------UUCAUCAUCUGU- -5' |
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28800 | 5' | -50.2 | NC_006146.1 | + | 76373 | 0.66 | 0.995616 |
Target: 5'- aCCGCCACgagaggGCGCgccgGGGGaGGgaccggGGGCGc -3' miRNA: 3'- -GGCGGUGa-----CGCGa---UUUCaUCa-----UCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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