Results 41 - 60 of 325 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28803 | 3' | -60.1 | NC_006146.1 | + | 116666 | 0.66 | 0.768291 |
Target: 5'- cGGGGcCGCCcAGaGGCUCUgcucccGCCCCa -3' miRNA: 3'- -UCUC-GCGGaUC-CCGAGGuucu--CGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 126181 | 0.66 | 0.749725 |
Target: 5'- aGGGGgGCCaguGGGCaggcaCCugauAGAGUCCCu -3' miRNA: 3'- -UCUCgCGGau-CCCGa----GGu---UCUCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 55524 | 0.66 | 0.740291 |
Target: 5'- cGAGCgGCC-AGGGcCUCCA---GCUCCg -3' miRNA: 3'- uCUCG-CGGaUCCC-GAGGUucuCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 33182 | 0.66 | 0.734587 |
Target: 5'- --cGCGCCgccgcucgguccuGGGcCUCCGGGuGCUCCu -3' miRNA: 3'- ucuCGCGGau-----------CCC-GAGGUUCuCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 168335 | 0.66 | 0.730768 |
Target: 5'- cGGGGCcgggGCCUGgcGGGggCCAgcgcGGGGUCCCg -3' miRNA: 3'- -UCUCG----CGGAU--CCCgaGGU----UCUCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 137845 | 0.66 | 0.721163 |
Target: 5'- aGGGGgGCUcGGGGUgggugggcgugUCCc-GGGCCCCg -3' miRNA: 3'- -UCUCgCGGaUCCCG-----------AGGuuCUCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 66359 | 0.66 | 0.721163 |
Target: 5'- cGAGCcCCUggugcAGGGCuUUCAAG-GCCUCa -3' miRNA: 3'- uCUCGcGGA-----UCCCG-AGGUUCuCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 90975 | 0.66 | 0.759061 |
Target: 5'- uGGGUcagGUC-AGGGUUUCGGGAaGCCCCc -3' miRNA: 3'- uCUCG---CGGaUCCCGAGGUUCU-CGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 116810 | 0.67 | 0.662311 |
Target: 5'- gGGAGCaGgUUAGGG-UCCAAGAGCgCg -3' miRNA: 3'- -UCUCG-CgGAUCCCgAGGUUCUCGgGg -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 130044 | 0.67 | 0.662311 |
Target: 5'- cGGAcCGCgaGccGGGcCUCCAAGAGCgCCCc -3' miRNA: 3'- -UCUcGCGgaU--CCC-GAGGUUCUCG-GGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 157770 | 0.67 | 0.662311 |
Target: 5'- --uGCucuCCUcguGGGC-CCGGGAGCCCCc -3' miRNA: 3'- ucuCGc--GGAu--CCCGaGGUUCUCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 13410 | 0.67 | 0.672224 |
Target: 5'- aGGAGCaCCUcAGGGUgccUCCccGGGUCCCa -3' miRNA: 3'- -UCUCGcGGA-UCCCG---AGGuuCUCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 72564 | 0.67 | 0.662311 |
Target: 5'- uGGGCGCCggcguggugcUGGGGCUugCCGGGGuuagaaCCCCg -3' miRNA: 3'- uCUCGCGG----------AUCCCGA--GGUUCUc-----GGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 142360 | 0.67 | 0.710515 |
Target: 5'- cGGGUcuuggGCCUGGGaGgUCCGGGGuguugagccugcuGCCCCa -3' miRNA: 3'- uCUCG-----CGGAUCC-CgAGGUUCU-------------CGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 81647 | 0.67 | 0.69195 |
Target: 5'- cGGGaCG-UUGGGGCUCgGAGGGUgCCg -3' miRNA: 3'- uCUC-GCgGAUCCCGAGgUUCUCGgGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 126478 | 0.67 | 0.711487 |
Target: 5'- cGGGUGCC-AGa-CcCCGGGAGCCCCu -3' miRNA: 3'- uCUCGCGGaUCccGaGGUUCUCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 119728 | 0.67 | 0.69195 |
Target: 5'- cGAGCaGCCUccccGGCUCCAc-AGCCCa -3' miRNA: 3'- uCUCG-CGGAuc--CCGAGGUucUCGGGg -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 14563 | 0.67 | 0.701746 |
Target: 5'- uGGGcCGCUUucGGGGCgu---GAGCCCCa -3' miRNA: 3'- uCUC-GCGGA--UCCCGagguuCUCGGGG- -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 83509 | 0.67 | 0.701746 |
Target: 5'- -uGGUGCCUcuccuggcgcAGGGUUCUGaucAGGGCCCa -3' miRNA: 3'- ucUCGCGGA----------UCCCGAGGU---UCUCGGGg -5' |
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28803 | 3' | -60.1 | NC_006146.1 | + | 43217 | 0.67 | 0.701746 |
Target: 5'- uGGGGCGCUgcuGGUgagAGGAGCCCCc -3' miRNA: 3'- -UCUCGCGGaucCCGaggUUCUCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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