miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28806 5' -58.7 NC_006146.1 + 104375 1.09 0.001753
Target:  5'- gGGCCCCCCUGUUUGACAGCGGCGUGUa -3'
miRNA:   3'- -CCGGGGGGACAAACUGUCGCCGCACA- -5'
28806 5' -58.7 NC_006146.1 + 46440 0.74 0.375679
Target:  5'- gGGCCCCCa-GgaaGGCGGCGGCGUa- -3'
miRNA:   3'- -CCGGGGGgaCaaaCUGUCGCCGCAca -5'
28806 5' -58.7 NC_006146.1 + 120743 0.72 0.470094
Target:  5'- cGCCCCCCUGguccUGACgacgagcgcuGGCGGCGc-- -3'
miRNA:   3'- cCGGGGGGACaa--ACUG----------UCGCCGCaca -5'
28806 5' -58.7 NC_006146.1 + 126605 0.72 0.488544
Target:  5'- aGCCCCCacuaccgGUUUGGCGGUGGUcgGUGg -3'
miRNA:   3'- cCGGGGGga-----CAAACUGUCGCCG--CACa -5'
28806 5' -58.7 NC_006146.1 + 119916 0.72 0.488544
Target:  5'- cGCCCUCUUGcggucagugUUGGCAGCGGCGcUGc -3'
miRNA:   3'- cCGGGGGGACa--------AACUGUCGCCGC-ACa -5'
28806 5' -58.7 NC_006146.1 + 127836 0.71 0.53702
Target:  5'- aGCCuCCCCUGgagggugggcuugGGCAGcCGGCGUGc -3'
miRNA:   3'- cCGG-GGGGACaaa----------CUGUC-GCCGCACa -5'
28806 5' -58.7 NC_006146.1 + 53193 0.7 0.594997
Target:  5'- cGGCCCCggCCUug--GGgGGCGGCGUGc -3'
miRNA:   3'- -CCGGGG--GGAcaaaCUgUCGCCGCACa -5'
28806 5' -58.7 NC_006146.1 + 115355 0.69 0.644874
Target:  5'- aGGCCUUCCUGgccGGCguGGCGGCGg-- -3'
miRNA:   3'- -CCGGGGGGACaaaCUG--UCGCCGCaca -5'
28806 5' -58.7 NC_006146.1 + 44717 0.69 0.651859
Target:  5'- uGGCCCCCgCUGgccggccugaugcggUGGCcgcgGGCGGCuGUGg -3'
miRNA:   3'- -CCGGGGG-GACaa-------------ACUG----UCGCCG-CACa -5'
28806 5' -58.7 NC_006146.1 + 137977 0.69 0.65485
Target:  5'- gGGCCUCCCgGg--GGCccGGCGGgGUGg -3'
miRNA:   3'- -CCGGGGGGaCaaaCUG--UCGCCgCACa -5'
28806 5' -58.7 NC_006146.1 + 115210 0.69 0.664809
Target:  5'- aGCCCCCC-----GGCGGCGGcCGUGc -3'
miRNA:   3'- cCGGGGGGacaaaCUGUCGCC-GCACa -5'
28806 5' -58.7 NC_006146.1 + 122636 0.68 0.682666
Target:  5'- gGGCCCUCUUucgcgccagGACGGCGGCGg-- -3'
miRNA:   3'- -CCGGGGGGAcaaa-----CUGUCGCCGCaca -5'
28806 5' -58.7 NC_006146.1 + 105777 0.68 0.684643
Target:  5'- aGGCCUCUaug--UGGCucGCGGCGUGUa -3'
miRNA:   3'- -CCGGGGGgacaaACUGu-CGCCGCACA- -5'
28806 5' -58.7 NC_006146.1 + 118053 0.68 0.694503
Target:  5'- aGCCCCCggGcgggGGCGGCGGCGg-- -3'
miRNA:   3'- cCGGGGGgaCaaa-CUGUCGCCGCaca -5'
28806 5' -58.7 NC_006146.1 + 96212 0.68 0.703334
Target:  5'- aGCCCCCCUGUUcucuCAagaauuagccuguGCGuGCGUGUu -3'
miRNA:   3'- cCGGGGGGACAAacu-GU-------------CGC-CGCACA- -5'
28806 5' -58.7 NC_006146.1 + 94538 0.68 0.703334
Target:  5'- cGCCCUCUcGUggcggucUUGAgGGUGGCGUGg -3'
miRNA:   3'- cCGGGGGGaCA-------AACUgUCGCCGCACa -5'
28806 5' -58.7 NC_006146.1 + 106465 0.68 0.704313
Target:  5'- aGCCCCUCUGUcuccUGGCAGCGuacgccgcCGUGg -3'
miRNA:   3'- cCGGGGGGACAa---ACUGUCGCc-------GCACa -5'
28806 5' -58.7 NC_006146.1 + 56829 0.68 0.704313
Target:  5'- uGGCCCCCgaGgcggccucUGGCGGCGGgGg-- -3'
miRNA:   3'- -CCGGGGGgaCaa------ACUGUCGCCgCaca -5'
28806 5' -58.7 NC_006146.1 + 117859 0.68 0.712119
Target:  5'- cGCCCCCCUuaccucuCGGCGGCGg-- -3'
miRNA:   3'- cCGGGGGGAcaaacu-GUCGCCGCaca -5'
28806 5' -58.7 NC_006146.1 + 114335 0.68 0.714064
Target:  5'- cGGCCgCCCCUGacggaggugGACGGgGGCcUGg -3'
miRNA:   3'- -CCGG-GGGGACaaa------CUGUCgCCGcACa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.