miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28806 5' -58.7 NC_006146.1 + 46440 0.74 0.375679
Target:  5'- gGGCCCCCa-GgaaGGCGGCGGCGUa- -3'
miRNA:   3'- -CCGGGGGgaCaaaCUGUCGCCGCAca -5'
28806 5' -58.7 NC_006146.1 + 167763 0.67 0.788963
Target:  5'- cGCCCuCCCUcugcucccGUUggcggggagaaUGACAGCugGGCGUGg -3'
miRNA:   3'- cCGGG-GGGA--------CAA-----------ACUGUCG--CCGCACa -5'
28806 5' -58.7 NC_006146.1 + 170559 0.67 0.788963
Target:  5'- cGCCCuCCCUcugcucccGUUggccgggagaaUGACAGCugGGCGUGg -3'
miRNA:   3'- cCGGG-GGGA--------CAA-----------ACUGUCG--CCGCACa -5'
28806 5' -58.7 NC_006146.1 + 44820 0.66 0.831687
Target:  5'- aGGCCCCgCUGcggcuggUGACGGaGGUggGUGUa -3'
miRNA:   3'- -CCGGGGgGACaa-----ACUGUCgCCG--CACA- -5'
28806 5' -58.7 NC_006146.1 + 137977 0.69 0.65485
Target:  5'- gGGCCUCCCgGg--GGCccGGCGGgGUGg -3'
miRNA:   3'- -CCGGGGGGaCaaaCUG--UCGCCgCACa -5'
28806 5' -58.7 NC_006146.1 + 105777 0.68 0.684643
Target:  5'- aGGCCUCUaug--UGGCucGCGGCGUGUa -3'
miRNA:   3'- -CCGGGGGgacaaACUGu-CGCCGCACA- -5'
28806 5' -58.7 NC_006146.1 + 56829 0.68 0.704313
Target:  5'- uGGCCCCCgaGgcggccucUGGCGGCGGgGg-- -3'
miRNA:   3'- -CCGGGGGgaCaa------ACUGUCGCCgCaca -5'
28806 5' -58.7 NC_006146.1 + 113695 0.68 0.714064
Target:  5'- cGGCCUccggCCCgGg--GACGGCGGCGg-- -3'
miRNA:   3'- -CCGGG----GGGaCaaaCUGUCGCCGCaca -5'
28806 5' -58.7 NC_006146.1 + 167600 0.67 0.770877
Target:  5'- gGGCCuCCCCUGgg-GGCcucGGgGGCGg-- -3'
miRNA:   3'- -CCGG-GGGGACaaaCUG---UCgCCGCaca -5'
28806 5' -58.7 NC_006146.1 + 53145 0.67 0.788963
Target:  5'- uGCCUCCuCUGUggcggcGACuGCGGCG-GUg -3'
miRNA:   3'- cCGGGGG-GACAaa----CUGuCGCCGCaCA- -5'
28806 5' -58.7 NC_006146.1 + 169464 0.67 0.770877
Target:  5'- gGGCCuCCCCUGgg-GGCcucGGgGGCGg-- -3'
miRNA:   3'- -CCGG-GGGGACaaaCUG---UCgCCGCaca -5'
28806 5' -58.7 NC_006146.1 + 102844 0.68 0.723749
Target:  5'- -aCCCCCCUG-UUGGCAGCcagGGCa--- -3'
miRNA:   3'- ccGGGGGGACaAACUGUCG---CCGcaca -5'
28806 5' -58.7 NC_006146.1 + 119916 0.72 0.488544
Target:  5'- cGCCCUCUUGcggucagugUUGGCAGCGGCGcUGc -3'
miRNA:   3'- cCGGGGGGACa--------AACUGUCGCCGC-ACa -5'
28806 5' -58.7 NC_006146.1 + 170395 0.67 0.770877
Target:  5'- gGGCCuCCCCUGgg-GGCcucGGgGGCGg-- -3'
miRNA:   3'- -CCGG-GGGGACaaaCUG---UCgCCGCaca -5'
28806 5' -58.7 NC_006146.1 + 53193 0.7 0.594997
Target:  5'- cGGCCCCggCCUug--GGgGGCGGCGUGc -3'
miRNA:   3'- -CCGGGG--GGAcaaaCUgUCGCCGCACa -5'
28806 5' -58.7 NC_006146.1 + 99042 0.68 0.723749
Target:  5'- aGGCCCCCCaGggcc-CGGCGG-GUGUc -3'
miRNA:   3'- -CCGGGGGGaCaaacuGUCGCCgCACA- -5'
28806 5' -58.7 NC_006146.1 + 119315 0.67 0.788071
Target:  5'- uGGCCCCUCUGgcucccccgGGCcccucccGGCGGCGc-- -3'
miRNA:   3'- -CCGGGGGGACaaa------CUG-------UCGCCGCaca -5'
28806 5' -58.7 NC_006146.1 + 168695 0.67 0.788963
Target:  5'- cGCCCuCCCUcugcucccGUUggcggggagaaUGACAGCugGGCGUGg -3'
miRNA:   3'- cCGGG-GGGA--------CAA-----------ACUGUCG--CCGCACa -5'
28806 5' -58.7 NC_006146.1 + 44717 0.69 0.651859
Target:  5'- uGGCCCCCgCUGgccggccugaugcggUGGCcgcgGGCGGCuGUGg -3'
miRNA:   3'- -CCGGGGG-GACaa-------------ACUG----UCGCCG-CACa -5'
28806 5' -58.7 NC_006146.1 + 94538 0.68 0.703334
Target:  5'- cGCCCUCUcGUggcggucUUGAgGGUGGCGUGg -3'
miRNA:   3'- cCGGGGGGaCA-------AACUgUCGCCGCACa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.